Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31306
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23423| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        28   6.3  
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)                   28   8.4  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   28   8.4  

>SB_23423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 90  RTYNGLVCLDELCCQAGLSASQLDDQLERDTNVAFIVK 203
           R  NG    DE+CC+ GLS  +LDD +E D NV  + K
Sbjct: 33  RWLNGKHSFDEICCKTGLSFQELDDVIENDPNVVVVWK 70


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 212 LPSLDDEGDVRVPLQLVVELRRGQSRLAAQLVQAHESVVR 93
           +P  DDE  V V  +L V+  R Q R   +   +HES+ R
Sbjct: 4   IPDKDDEAVVYVRKELNVKAPRIQWRTPCECASSHESICR 43


>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
          Length = 390

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 183 SCPAPVGRRAATRTVPPGSTARPGTRVRCTSSLPTG---CGRFEATPSRRSKLLDTYKPF 13
           +CPA VGRR A+ +    S+      + C   + TG   C R  A  + R +L  + KP 
Sbjct: 45  TCPAYVGRRNASIS----SSVMCFAAIMCRQCIATGVSVCNRLSARHNSRLRLAMSQKPS 100

Query: 12  V 10
           V
Sbjct: 101 V 101


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 183 SCPAPVGRRAATRTVPPGSTARPGTRVRCTSSLPTG---CGRFEATPSRRSKLLDTYKPF 13
           +CPA VGRR A+ +    S+      + C   + TG   C R  A  + R +L  + KP 
Sbjct: 164 TCPAYVGRRNASIS----SSVMCFAAIMCRQCIATGVSVCNRLSARHNSRLRLAMSQKPS 219

Query: 12  V 10
           V
Sbjct: 220 V 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,067,392
Number of Sequences: 59808
Number of extensions: 353554
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)