Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31306
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    26   0.30 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.91 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 371 VPVIQWKVSPDNLLCTIYIKLVSLTLSFGLG 463
           VP + W++S  +LL  +++K   +T   GLG
Sbjct: 104 VPHMAWQLSTAHLLAQLFLKSTEVTPRDGLG 134


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/38 (23%), Positives = 21/38 (55%)
 Frame = -3

Query: 206 SLDDEGDVRVPLQLVVELRRGQSRLAAQLVQAHESVVR 93
           +L+D+ +++V ++ V+E   G      QL++   +  R
Sbjct: 193 NLEDDVEIKVQVESVIEFEPGLDSFTQQLIEMKNAQAR 230


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 134 LAAQLVQAHESVVRPRYRLAVVASKRRRLVVQSYWIL 24
           L A  +  + +V RP     +++ +R RL+V + WIL
Sbjct: 156 LCAISLDRYLAVTRPVSYPQIMSPRRARLLVATVWIL 192



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 96  TSSLPTGCGRFEATPSRRSK 37
           T +L T C   E TPS+ S+
Sbjct: 348 TETLNTKCNTLERTPSKCSQ 367


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 138 PPGSTARPGTRVRCTSSLPTGC 73
           P G+T  P   V CT+  P  C
Sbjct: 414 PTGATTGPNEIVTCTNCGPNPC 435


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 138 PPGSTARPGTRVRCTSSLPTGC 73
           P G+T  P   V CT+  P  C
Sbjct: 400 PTGATTGPNEIVTCTNCGPNPC 421


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 138 PPGSTARPGTRVRCTSSLPTGC 73
           P G+T  P   V CT+  P  C
Sbjct: 434 PTGATTGPNEIVTCTNCGPNPC 455


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 138 PPGSTARPGTRVRCTSSLPTGC 73
           P G+T  P   V CT+  P  C
Sbjct: 383 PTGATTGPNEIVTCTNCGPNPC 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,729
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)