Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31301
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po...    27   1.8  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   3.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   7.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   7.2  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    25   9.5  

>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 189

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 394 FFLRIQSINLSFVYFSIQI*ELVVYHHH 311
           +FLR++SI+  F  F I I E +VY ++
Sbjct: 77  YFLRLESIDYEFSEFHIIINESIVYPYY 104


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 335 LNLDRKVNE*EINRLNSKKEFDGVSAKVTDLMQSTLLSSCF 457
           L+L+ K+ + E+N+   KK+F G    + D    +L+SS F
Sbjct: 387 LSLELKLMQNELNKGQLKKQFKGDLRNLADWNNLSLVSSKF 427


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 445 LQLFFLKIWNNAGGL 489
           L+L+FLKIW  A G+
Sbjct: 917 LRLYFLKIWKEAKGM 931


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -2

Query: 372 LISHSFTFRSKFKNL*FTIIIEVCIM 295
           ++++S T +  FK+L F   + +C++
Sbjct: 53  IVTYSLTIQFNFKSLLFLFFVSICVV 78


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 402 PSNSFFEFNLLISHSFT 352
           PSN+ FEFN+ +S ++T
Sbjct: 438 PSNTAFEFNVTLSINYT 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,757,281
Number of Sequences: 5004
Number of extensions: 28069
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)