Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31299
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 33 0.29
02_05_0795 - 31792231-31794780 32 0.51
07_01_0526 - 3913713-3913881,3914505-3914677 30 2.1
01_06_1678 - 39095986-39096205,39096400-39096477,39096578-390969... 29 2.7
12_02_0434 + 19025539-19026027,19026474-19027553 29 4.8
04_03_0904 + 20717005-20718087 28 6.3
04_01_0146 + 1701744-1701860,1702036-1702112,1702247-1702344,170... 28 6.3
03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621 28 6.3
05_05_0173 + 22956927-22958615 28 8.4
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 28 8.4
04_01_0574 - 7450124-7450525,7450957-7451322 28 8.4
03_01_0092 - 731069-731434,731569-733080 28 8.4
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 233 APDGTPIQITYIADANGYQPSGAHLPTTPAPLPIP 337
+P P+ + I G+ P GAH P PAP P+P
Sbjct: 214 SPANNPL-LGSIPKPGGFPPLGAHAPFQPAPTPVP 247
>02_05_0795 - 31792231-31794780
Length = 849
Score = 31.9 bits (69), Expect = 0.51
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2
Query: 182 EGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 325
EG A+ ++G +GY A D P++ +A +P PT+ AP
Sbjct: 47 EGAAAAAGTIEGEAGYAAADADPMEDEAADEAGAAEPMEDDPPTSSAP 94
>07_01_0526 - 3913713-3913881,3914505-3914677
Length = 113
Score = 29.9 bits (64), Expect = 2.1
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Frame = +2
Query: 95 DADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQITYIAD 274
D D F +++ + +G +L EG +DA + Q S+ + G I + A
Sbjct: 19 DDDAFGRSVDARFEALDA-NGDGVLSLAGEGWDDA-VEPQSSTSHIVLSGLRINLNLTAA 76
Query: 275 ANGYQPSGAHLPTTPAPLPIPDYIARAI-EYIRTH 376
+GAH P IP Y R+ EY R H
Sbjct: 77 TADPAKTGAHDVRLAPPPYIPQYNERSYHEYWREH 111
>01_06_1678 -
39095986-39096205,39096400-39096477,39096578-39096949,
39097374-39097671,39097867-39098077,39098331-39099023
Length = 623
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 269 ADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 388
A ++ P + +T APLP P + E++ HPP P
Sbjct: 48 ASSSSSSPPPSSSASTAAPLPAPPTPSPVPEHLHHHPPPP 87
>12_02_0434 + 19025539-19026027,19026474-19027553
Length = 522
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 344 IARAIEYIRTHPPKPEVGQRI 406
++RAIEY+ THP +P + + I
Sbjct: 334 VSRAIEYLHTHPTRPVIHRDI 354
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 269 ADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 391
ADA GY PT P P P+ + + H PKPE
Sbjct: 22 ADAGGYGGGYTPTPTPVKPAPKPEKPPKEHKPPHHHEPKPE 62
>04_01_0146 +
1701744-1701860,1702036-1702112,1702247-1702344,
1704073-1704228,1704671-1705290,1705397-1705458,
1705551-1705941,1706404-1706575,1706686-1707212
Length = 739
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 281 RWRQQCK*FEWEYHQGQCSRLNLGRRWMHPH 189
+W+ QC+ E + QC+R +G RW H
Sbjct: 169 KWKGQCQAGE-AFRSNQCNRKIIGARWYDKH 198
>03_06_0338 + 33240111-33240860,33241248-33241536,33242494-33242621
Length = 388
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +2
Query: 269 ADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 388
A + PS AH P P P P+ R + HPP P
Sbjct: 160 APTSAAPPSPAHAPELKKPPPPPEAHHRPTKSYTGHPPPP 199
>05_05_0173 + 22956927-22958615
Length = 562
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Frame = +2
Query: 284 YQPSG--AHLPTTPAPLPIPDYI---ARAIEYIRTHPP 382
Y PS AH P P P+P P+ I A +E+ +HPP
Sbjct: 86 YDPSAPEAHPPYVPPPVPPPEAIPELADDLEFGFSHPP 123
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 6 TSSSLWSR*PSLTFLTSCALAKLMPKLCRKMLTFSRTNTSTNIRPATESVARNKERS 176
T +R P+ T TS + + +K FS TNTSTN E ++K+R+
Sbjct: 2330 TIEDFLARYPNATRKTSSGGSNEHSEAVKKRRGFSVTNTSTNCDDFEERTVQSKKRA 2386
>04_01_0574 - 7450124-7450525,7450957-7451322
Length = 255
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 671 GCAARRLSWVTPGFSQSRRCKRRPVNCNTTHYRG 570
GC RRL TP RR K +NC+ T+ RG
Sbjct: 125 GCTVRRL---TPSEIDERRRKVLCINCDETYSRG 155
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 209 VQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPI-PDYIARAIEYIRTHPPK 385
V G S P P+Q T +A A P H TP P+ + P +I + PP+
Sbjct: 225 VTGQSIAAVPP-PPLQPTPVASAAPPPPPQHHHQQTPPPIQVQPHHIMPMTPQPQLQPPQ 283
Query: 386 PE 391
P+
Sbjct: 284 PQ 285
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,968,600
Number of Sequences: 37544
Number of extensions: 447210
Number of successful extensions: 1432
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1427
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -