Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31299
         (707 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    33   0.19 
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    32   0.43 
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    32   0.43 
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa...    29   2.3  
At1g53815.1 68414.m06125 F-box family protein contains Pfam prof...    29   2.3  
At3g25950.1 68416.m03234 hypothetical protein                          29   4.0  
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10...    28   5.3  
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10...    28   5.3  
At1g27020.1 68414.m03294 expressed protein                             27   9.2  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = +2

Query: 218  SSGY--TAPDGTPIQITYIADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRTHP 379
            S GY  T+P  +P   TY   + GY P S A+ PT+P+  P  P Y   +  Y  T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 194 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 349
           D S  +   +   +P   P+ +  +  A G+ P GAH P  P P P+P  +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 194 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIA 349
           D S  +   +   +P   P+ +  +  A G+ P GAH P  P P P+P  +A
Sbjct: 201 DHSCRLPNDARAPSPVNNPL-LGSLPKAEGFPPLGAHGPFQPTPSPVPTPLA 251


>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
           family protein similar to DNA-binding protein gi|601843
           [Arabidopsis thaliana], remorin [Solanum tuberosum]
           GI:1881585; contains Pfam profiles PF03763: Remorin
           C-terminal region, PF03766: Remorin N-terminal region
          Length = 212

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 245 TPIQITYIADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 391
           +P ++T  A A+   P+ A +P  PAP P P  + + +   +   P PE
Sbjct: 13  SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60


>At1g53815.1 68414.m06125 F-box family protein contains Pfam profile
           PF00646: F-box domain
          Length = 237

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 590 YNSLAVVYNVVTGKTLALPNL 652
           YNS+ V+YN +TG++  LP L
Sbjct: 141 YNSVGVIYNPITGESSNLPKL 161


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 387 GLGG*VLMYSMARAM*SGIGRGAGVVGRWAPEGW 286
           GL G V++Y MA     G G   GVV RWA   W
Sbjct: 187 GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218


>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 266 IADANGYQPSGAHLPTTPAPLPIPDYIA 349
           I  A G+ P GAH P  P   P+P  +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251


>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
           WD-40 repeats (PF00400) (1 weak)
          Length = 1131

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 266 IADANGYQPSGAHLPTTPAPLPIPDYIA 349
           I  A G+ P GAH P  P   P+P  +A
Sbjct: 224 IPKAGGFPPLGAHGPFQPTASPVPTPLA 251


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 625 WENPGVTQLNRLAAHPPFASW 687
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,152,292
Number of Sequences: 28952
Number of extensions: 317712
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)