Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31298
(312 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 177 4e-46
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 107 4e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 83 1e-17
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 56 9e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 52 2e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 46 1e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 43 9e-06
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.040
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 0.65
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 2.6
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.5
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 25 3.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 4.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 24 6.1
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 24 6.1
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 23 8.1
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 23 8.1
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S... 23 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 177 bits (430), Expect = 4e-46
Identities = 76/85 (89%), Positives = 83/85 (97%)
Frame = +1
Query: 58 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 237
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 238 RGILTLKYPIEHGIITNWDDMEKIW 312
RGILTLKYPIEHGI+ NWDDMEKIW
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIW 86
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 107 bits (257), Expect = 4e-25
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = +1
Query: 64 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 243
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 244 ILTLKYPIEHGIITNWDDMEKIW 312
+L ++ PIE GII NW DME+IW
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEIW 90
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 82.6 bits (195), Expect = 1e-17
Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Frame = +1
Query: 70 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 243
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 244 ILTLKYPIEHGIITNWDDMEKIW 312
+L +KYP+E+GII ++++M ++W
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQLW 86
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 56.4 bits (130), Expect = 9e-10
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 24/103 (23%)
Frame = +1
Query: 76 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 204
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 205 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIW 312
D ++G++A K +L YPI HG I NWD ME+ W
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFW 109
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 52.0 bits (119), Expect = 2e-08
Identities = 31/102 (30%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Frame = +1
Query: 7 ESIPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 186
E + + PT + F+ +D+ LV+DNGS +AG+ G+ P+ VF ++V R R +
Sbjct: 8 EPVFSGPTPS---FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR--- 60
Query: 187 VGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIITNWDDMEKI 309
+ + + VG++ + G ++ + P E +I+NWD ME++
Sbjct: 61 -KLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQV 101
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 46.4 bits (105), Expect = 1e-06
Identities = 27/84 (32%), Positives = 44/84 (52%)
Frame = +1
Query: 61 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 240
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 241 GILTLKYPIEHGIITNWDDMEKIW 312
G + +K I +G + NWD +W
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLW 84
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 43.2 bits (97), Expect = 9e-06
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +1
Query: 61 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 240
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 241 GI--LTLKYPIEHGIITNWDDMEKIW 312
I + +K +GII +W+ W
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTW 87
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.040
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 121 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 264
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.1 bits (57), Expect = 0.65
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 76 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 255
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 256 KYPIEH--GIITNWDDMEKIW 312
++ H G + +W +W
Sbjct: 58 QFRRAHEKGYLVHWSTETAVW 78
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 2.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 181 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 267
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 3.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 88 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 240
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 24.6 bits (51), Expect = 3.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 285 GDDTVLDGVLQSEDTSLALGLVTHVGVFLAHTDHH 181
GDD+VLD V +D L L AH D H
Sbjct: 676 GDDSVLDTVTAGKDVYAFLNLFFAKFPQYAHLDFH 710
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -2
Query: 164 RPTMDGKTARGASSPAKPALHMPEPL 87
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 23.8 bits (49), Expect = 6.1
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -1
Query: 135 GRVVAGETGLAHAGAIVDYKRSNIVVA 55
G+V+ G++ A A DYK+ ++A
Sbjct: 4 GKVIEGQSVAEWASAYFDYKKGKKIIA 30
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 23.8 bits (49), Expect = 6.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 83 STMAPACARPVSPATTRPAPSS 148
S AP+ P +P+T +P PS+
Sbjct: 107 SITAPSKTEPSTPSTEKPEPST 128
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 23.4 bits (48), Expect = 8.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Frame = +2
Query: 140 PSSRPSWVALATRA*WSVWARKTPTWVTR 226
P S P+W+++ WA + W R
Sbjct: 160 PQSFPTWISVYRNVPEKAWANRCVEWYFR 188
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 23.4 bits (48), Expect = 8.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 113 VSPATTRPAPSSRPSWVALATRA*WSVWARKTPT 214
V+P P PSS PS +L S+ R +PT
Sbjct: 562 VTPQAPSPLPSSNPSQASLTEE---SLSTRSSPT 592
>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
Raf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 638
Score = 23.4 bits (48), Expect = 8.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 22 SPTQTHTKFKMCDDDVAALVVDNGSG 99
+PT K + DDD+ A+ NG G
Sbjct: 338 APTDYIHKLALSDDDLLAVACKNGYG 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,377,407
Number of Sequences: 5004
Number of extensions: 26508
Number of successful extensions: 97
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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