Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31298
(312 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 192 3e-50
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 191 1e-49
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 191 1e-49
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 191 1e-49
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 191 1e-49
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 191 1e-49
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 191 1e-49
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 191 1e-49
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 7e-49
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 2e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 2e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 4e-47
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 182 6e-47
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 152 6e-38
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 103 2e-23
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 98 1e-21
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 81 2e-16
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 63 3e-11
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 43 5e-05
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 43 5e-05
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 34 0.024
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 31 0.13
AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical ... 30 0.39
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 0.52
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 1.6
AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical ... 28 1.6
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 27 2.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 27 2.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 27 2.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 27 2.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 27 2.1
AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trn... 26 6.4
AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trn... 26 6.4
AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen prot... 26 6.4
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 25 8.4
Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical pr... 25 8.4
U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical pr... 25 8.4
U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical pr... 25 8.4
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 192 bits (469), Expect = 3e-50
Identities = 86/87 (98%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 191 bits (465), Expect = 1e-49
Identities = 85/87 (97%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 191 bits (465), Expect = 1e-49
Identities = 85/87 (97%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 191 bits (465), Expect = 1e-49
Identities = 85/87 (97%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 191 bits (465), Expect = 1e-49
Identities = 85/87 (97%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 191 bits (465), Expect = 1e-49
Identities = 84/87 (96%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 191 bits (465), Expect = 1e-49
Identities = 85/87 (97%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 191 bits (465), Expect = 1e-49
Identities = 85/87 (97%), Positives = 87/87 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKIW 312
SKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIW 87
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 7e-49
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKI 309
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKI 309
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDMEKI 309
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 4e-47
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 231
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 232 SKRGILTLKYPIEHGIITNWDDM 300
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 182 bits (442), Expect = 6e-47
Identities = 80/85 (94%), Positives = 85/85 (100%)
Frame = +1
Query: 58 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 237
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 238 RGILTLKYPIEHGIITNWDDMEKIW 312
RGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIW 86
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 152 bits (368), Expect = 6e-38
Identities = 67/69 (97%), Positives = 69/69 (100%)
Frame = +1
Query: 106 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 285
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 286 NWDDMEKIW 312
NWDDMEKIW
Sbjct: 65 NWDDMEKIW 73
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 103 bits (248), Expect = 2e-23
Identities = 45/88 (51%), Positives = 63/88 (71%), Gaps = 3/88 (3%)
Frame = +1
Query: 58 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 228
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 229 QSKRGILTLKYPIEHGIITNWDDMEKIW 312
+S RG+ +++YP+EHGI+ NW DMEKIW
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKIW 89
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 97.9 bits (233), Expect = 1e-21
Identities = 42/43 (97%), Positives = 43/43 (100%)
Frame = +1
Query: 184 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIW 312
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKIW
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIW 43
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 2/81 (2%)
Frame = +1
Query: 76 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM-VGMGQ-KDSYVGDEAQSKRGIL 249
+VVDNG+G K G+AG + P +FPS+VGRP + VG + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 250 TLKYPIEHGIITNWDDMEKIW 312
+ YP+++GI+ NWDDM +W
Sbjct: 69 DINYPMDNGIVRNWDDMAHVW 89
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 63.3 bits (147), Expect = 3e-11
Identities = 37/100 (37%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Frame = +1
Query: 52 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 195
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 196 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEKIW 312
D ++GDEA S T+KYPI HGI+ +WD ME+ W
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMERYW 100
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 42.7 bits (96), Expect = 5e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +1
Query: 67 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 246
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 247 LTLKYPIEHGIITNWDDMEKIW 312
++ PIE G + NWD ++IW
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIW 78
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 42.7 bits (96), Expect = 5e-05
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +1
Query: 67 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 246
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 247 LTLKYPIEHGIITNWDDMEKIW 312
++ PIE G + NWD ++IW
Sbjct: 58 FYVR-PIERGYVVNWDTQQQIW 78
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.9 bits (74), Expect = 0.024
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 61 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 159
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 83 STMAPACARPVSPATTRPAPSSRP 154
+T AP PATTRPAP+S+P
Sbjct: 317 ATRAPPATTRAPPATTRPAPASQP 340
>AC199170-9|ABO33267.1| 388|Caenorhabditis elegans Hypothetical
protein T08D2.8 protein.
Length = 388
Score = 29.9 bits (64), Expect = 0.39
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +2
Query: 74 RL*STMAPACARPVSPATTRPAPSSRPSWVALATRA 181
RL S +AP A P S A TR APS + VA RA
Sbjct: 231 RLSSAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 266
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 0.52
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 197 PIPTITPWWRGRPTMDGKTARGASSPAKPALHMPEPL 87
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 106 KAGFAGDDAPRAVFPSIVGRPRHQG 180
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AC024136-6|AAF35965.3| 425|Caenorhabditis elegans Hypothetical
protein F54A3.1 protein.
Length = 425
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +2
Query: 83 STMAPACARPVSPATTRPAPSSRPSWVALATRA 181
S +AP A P S A TR APS + VA RA
Sbjct: 238 SAVAPRRAPPASAAPTRRAPSPKAPVVAPTRRA 270
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 247 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 164
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 247 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 164
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 247 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 164
GY GP P + GP P PG EG
Sbjct: 386 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 413
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 247 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 164
GY GP P + GP P PG EG
Sbjct: 387 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 414
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 247 GYLSCSGPRHPRRSLSGPYRPSRPGGEG 164
GY GP P + GP P PG EG
Sbjct: 423 GYPGAPGPAGPIGNTGGPGLPGYPGNEG 450
>AF077541-9|AAC64633.1| 909|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform a protein.
Length = 909
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 233 LWASSPT*ESFWPIPTITPWWRGRP 159
LW SS E FWP + W GRP
Sbjct: 484 LWKSSKDGEPFWP----SEWGNGRP 504
>AF077541-8|AAK68426.1| 908|Caenorhabditis elegans Cysteinyl trna
synthetase protein1, isoform b protein.
Length = 908
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 233 LWASSPT*ESFWPIPTITPWWRGRP 159
LW SS E FWP + W GRP
Sbjct: 483 LWKSSKDGEPFWP----SEWGNGRP 503
>AF000198-7|AAB53052.1| 418|Caenorhabditis elegans Collagen protein
50 protein.
Length = 418
Score = 25.8 bits (54), Expect = 6.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 165 PSPPGRDGRYGPE 203
P PPG+DG GP+
Sbjct: 267 PGPPGKDGEAGPD 279
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 25.4 bits (53), Expect = 8.4
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 165 PSPPGRDGRYGPE 203
P PPG DG GPE
Sbjct: 117 PGPPGPDGNAGPE 129
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -3
Query: 229 GPRHPRRSLSGPYRPSRPGGEG 164
GP P P RP RPGG G
Sbjct: 144 GPPGPSGHPGKPGRPGRPGGHG 165
>Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical
protein R12H7.2 protein.
Length = 444
Score = 25.4 bits (53), Expect = 8.4
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +1
Query: 43 KFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 144
+F + +D V G +C +GF G D P V
Sbjct: 349 EFSLKGEDYVLKVSQGGKTICLSGFMGIDLPERV 382
>U40030-6|AAA81135.3| 431|Caenorhabditis elegans Hypothetical
protein T13C2.3a protein.
Length = 431
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 38 TQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRP 154
T S+ +TT +T P +P TT P PS P
Sbjct: 319 TTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYP 357
>U40030-5|AAR12976.2| 506|Caenorhabditis elegans Hypothetical
protein T13C2.3b protein.
Length = 506
Score = 25.4 bits (53), Expect = 8.4
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +2
Query: 38 TQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRP 154
T S+ +TT +T P +P TT P PS P
Sbjct: 394 TTSTTTSTTTTTTTTTTEEPTTTTTSAPTTTTPEPSKYP 432
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,922,239
Number of Sequences: 27780
Number of extensions: 168500
Number of successful extensions: 874
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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