Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31295
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    28   1.3  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    27   2.9  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   5.0  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   6.7  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   6.7  
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   8.8  
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom...    25   8.8  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   8.8  

>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 597 KTVYVGQ---NRPISESLNIAKTAPTDSGY 677
           KTVYVG    N PI E L+  +T P +S +
Sbjct: 115 KTVYVGNLPPNTPIDEILSCVRTGPIESAW 144


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 497 WIRSWHNGLGWRRWIS 544
           W  SW NG+ + +WIS
Sbjct: 434 WRHSWSNGIDYAKWIS 449


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 446 PLPNSQWTVS*RKEVKRWIRSWHNGL 523
           PLP  QW          W+ +WH  +
Sbjct: 374 PLPGHQWAEVKHDNTVTWLATWHENI 399


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 541 NPSAPTQPVVPTTDPSFNL 485
           +PS P + VV TT+P+F L
Sbjct: 619 HPSVPVKLVVSTTEPAFQL 637


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 618 NRPISESLNIAKTAPTDSGYGVTR 689
           NRP   SLNI +T PT +G   T+
Sbjct: 317 NRPGFPSLNIPRTRPTTAGIANTQ 340


>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 573 GRQLCN--LVSVEIHLRQPSPLCQLRIHLLTSFLYDTV 466
           GR L +  +  +++HL QPS L Q  +  +T ++ +T+
Sbjct: 145 GRDLSDRPICYIQVHLHQPSKLTQNSLREMTVWVMETM 182


>SPCC1223.08c |dfr1||dihydrofolate reductase
           Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 615 QNRPISESLNIAKTAPTDSGYGVTRAPAVQRN 710
           +NRP+ + +NI  T  ++  +G+T+   +  N
Sbjct: 301 KNRPLKDRINIVITRNSNYNFGLTKKEKMPEN 332


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 549 SVEIHLRQPSPLCQLRIHLLTSFLYD 472
           S+ +HLR  S    L IHL  S+ Y+
Sbjct: 152 SISLHLRSESAPISLPIHLYKSYSYN 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,823
Number of Sequences: 5004
Number of extensions: 69762
Number of successful extensions: 300
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)