Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31295
         (757 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)                 29   4.1  
SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)                    28   9.4  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              28   9.4  
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_23302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 653

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 399 PDQFHIQTDDEDERYFLYQTHNGQYRKER 485
           PDQF  Q   + ++ F +QT NGQ +++R
Sbjct: 378 PDQFQKQQQQQQQQSFAFQTQNGQQQQQR 406


>SB_51829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1414

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 651 KTAPTDSGYGVTRAPAVQRNRGPPRFTSTTHSPLP 755
           +T P D  Y  TR P  +R+  PPR   + H   P
Sbjct: 460 RTPPGDPTYEHTRGPPPERHARPPRTPPSDHDDRP 494


>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
          Length = 473

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 740 CRRCESRWPSITLYGGRSCHSISRVCGRGFRYIQGLTYRSVLS 612
           C  C++    +    G+SC  +  VC  G + + G T+   LS
Sbjct: 177 CTNCDTITDEVLAKVGQSCPLLESVCLNGCKLVYGTTFSEFLS 219


>SB_20771| Best HMM Match : Popeye (HMM E-Value=6.4)
          Length = 353

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 584 NIQIQNCICWTKPTDK*VLEYSENRAHRLGIWSD 685
           ++Q  N I W  PTD+  L   E+  +RLG+ +D
Sbjct: 45  HLQKHNHILWMSPTDRPDLGGKEDDDNRLGLMTD 78


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 678 GVTRAPAVQRNRGPPRFTSTTHSPL 752
           G+T +P++QR++ PP      +SPL
Sbjct: 280 GLTNSPSLQRDQAPPSTPQACNSPL 304


>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1189

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 10/98 (10%)
 Frame = +3

Query: 492 KDGSVVGTTGWVGA-DGFLRLQDYIADDQG-YRIYKSKTVYVGQNRPISESLNIAKTA-- 659
           K+G  +G+T +    DGFL+++D +  D G Y+ + + ++   Q    S  L++ KT   
Sbjct: 419 KNGYKIGSTDFTKVGDGFLKVEDLLPSDMGMYQCFATNSLGSIQ---ASAELSVYKTGVP 475

Query: 660 ------PTDSGYGVTRAPAVQRNRGPPRFTSTTHSPLP 755
                 PT +    T  P       PP  T     P P
Sbjct: 476 LPTTRLPTTAQTPTTILPPTTTPTPPPTTTEPQRPPDP 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,547,693
Number of Sequences: 59808
Number of extensions: 525007
Number of successful extensions: 1498
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)