Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31295
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   1.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   7.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.4  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 175 NKVHSHHVKENRYNGNELRPQYFHLNKLVKV 83
           N +H+++ K N  N N  +  Y+++N + ++
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 175 NKVHSHHVKENRYNGNELRPQYFHLNKLVKV 83
           N +H+++ K N  N N  +  Y+++N + ++
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 175 NKVHSHHVKENRYNGNELRPQYFHLNKLVKV 83
           N +H+++ K N  N N  +  Y+++N + ++
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQI 118


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 175 NKVHSHHVKENRYNGNELRPQYFHLNKLVKV 83
           N +H+++ K N  N N  +  Y+++N + ++
Sbjct: 88  NTIHNNNYKYNYNNNNYNKKLYYNINYIEQI 118


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 734 RCESRWPSITLYGGRSCHSISRVCG 660
           RC    PSIT  G  S    S +CG
Sbjct: 332 RCSPSNPSITRTGLSSVRDSSIICG 356


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 483 RRLKDGSVVGTTGWVGADGF 542
           R +K  +  G   W+G+DG+
Sbjct: 359 RAVKRCNATGAFSWIGSDGW 378


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 427 FAAMVVDRLCLIVFTLFTVL 446


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 427 FAAMVVDRLCLIVFTLFTVL 446


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 427 FAAMVVDRLCLIVFTLFTVL 446


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 427 FAAMVVDRLCLIVFTLFTVL 446


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 427 FAAMVVDRLCLIVFTLFTVL 446


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 427 FAAMVVDRLCLIVFTLFTVL 446


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 495 FAAMVVDRLCLIVFTLFTVL 514


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 39  FNAIANSKFCLLVFKTFTNL 98
           F A+   + CL+VF  FT L
Sbjct: 495 FAAMVVDRLCLIVFTLFTVL 514


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 76  YLKLLPIYLNGSIE 117
           YLK  P+  NGS+E
Sbjct: 474 YLKKQPVIANGSLE 487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,857
Number of Sequences: 438
Number of extensions: 4961
Number of successful extensions: 21
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)