Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31294
         (512 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   4.9  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   6.4  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    21   8.5  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 56  LYFLSLIMK*NWYLLISKVTLTLFCFYL 139
           +YF+S  +  +   +I  VTLT  C+++
Sbjct: 489 IYFISKTLAESPIFIIIPVTLTSVCYFM 516


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 199 HFVRNKKKTHLE 164
           HF+R+ KK HL+
Sbjct: 63  HFLRSLKKVHLQ 74


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 354 SNIVKLKHFLNYYLTT*LGHLIYLVESHFVL*IPNLLKPFSYLCPITI 497
           + I K K +  YY      HL Y V   + + +      F +LC  T+
Sbjct: 105 AKIKKTKRYCYYYYAFFGVHLAYGVVIIYSICVQTEKSVFDFLCRHTV 152



 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -3

Query: 456 LVFIVQNEILLNK*DVPIMLLDNNSKN 376
           L++++ + IL+   ++  ++LDN S+N
Sbjct: 166 LLYLITDMILMRYKELNRVILDNMSRN 192


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 470 IFVLMSNYNFNKYI 511
           + +LMSNY F + I
Sbjct: 108 VIILMSNYAFTRII 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,777
Number of Sequences: 336
Number of extensions: 2357
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12258909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)