Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31294
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    26   3.8  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   5.0  

>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 201 HTLLETKKKLISKLQTSPPKHK*KQK 124
           HT  E  K+L   L TS PK+K +QK
Sbjct: 292 HTRCEFTKQLTQLLPTSLPKNKIRQK 317


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 116 LTLFCFYLCFGGDVCSFEMSFFFVSNKV 199
           L  FCF   FGG    F M  FF+  K+
Sbjct: 372 LLFFCFLGIFGGLYGEFVMRLFFLIQKL 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,101
Number of Sequences: 5004
Number of extensions: 39507
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)