Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31294
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine re...    29   2.0  
U40424-1|AAA81456.2|  461|Caenorhabditis elegans Twik family of ...    28   4.5  
AF083650-1|AAC32861.1|  461|Caenorhabditis elegans potassium cha...    28   4.5  

>AC024881-2|AAK71414.1|  274|Caenorhabditis elegans Serpentine
           receptor, class sx protein7 protein.
          Length = 274

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 32  EDTKTIKRLYFLSLIMK*NWYLLISKVTLTLFCFYLCFGGDVCSFEMSF 178
           E TK +KRL F   +   +WY       +T+F +Y+C    V   ++ F
Sbjct: 202 ESTKVMKRLQFSVAVFLGSWY-------ITIFTYYVCIAVGVTGEDLHF 243


>U40424-1|AAA81456.2|  461|Caenorhabditis elegans Twik family of
           potassium channelsprotein 18 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 329 SGLNLLTLIKYCKIETFFELLSNNMIGTSYLFSRISFCTI 448
           SGL L+T+I        F  L     GTS  F+ ISF TI
Sbjct: 228 SGLLLITVIWVIFCAVLFTFLEEWDFGTSLYFTLISFTTI 267


>AF083650-1|AAC32861.1|  461|Caenorhabditis elegans potassium
           channel subunit n2P18 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +2

Query: 329 SGLNLLTLIKYCKIETFFELLSNNMIGTSYLFSRISFCTI 448
           SGL L+T+I        F  L     GTS  F+ ISF TI
Sbjct: 228 SGLLLITVIWVIFCAVLFTFLEEWDFGTSLYFTLISFTTI 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,792,434
Number of Sequences: 27780
Number of extensions: 209643
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)