Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31292
         (513 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              178   2e-45
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             176   1e-44
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             175   2e-44
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         175   2e-44
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      174   3e-44
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              173   9e-44
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                155   2e-38
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 63   1e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  57   1e-08
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   8e-06
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   2e-05
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)             31   0.56 
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        29   3.0  
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.0  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)                   27   9.1  
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   9.1  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  178 bits (434), Expect = 2e-45
 Identities = 82/88 (93%), Positives = 86/88 (97%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LYANTVMSGGTTMYPG+ADRMQKEI+ALAPST+KIKIIAPPERKYSVWIGGSILA
Sbjct: 262 DIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILA 321

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 322 SLSTFQQMWISKQEYDESGPAIVHRKCF 349


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  176 bits (428), Expect = 1e-44
 Identities = 81/88 (92%), Positives = 85/88 (96%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LYANTV+SGGTTMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILA
Sbjct: 251 DIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 310

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 311 SLSTFQQMWISKQEYDESGPAIVHRKCF 338


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  175 bits (425), Expect = 2e-44
 Identities = 80/88 (90%), Positives = 85/88 (96%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILA 348

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  175 bits (425), Expect = 2e-44
 Identities = 80/88 (90%), Positives = 85/88 (96%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LYANTV+SGG+TMYPGIADRMQKEIT+LAP T+KIKIIAPPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILA 347

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  174 bits (424), Expect = 3e-44
 Identities = 80/88 (90%), Positives = 85/88 (96%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LYANTV+SGG+TMYPGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 348

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  173 bits (420), Expect = 9e-44
 Identities = 79/88 (89%), Positives = 85/88 (96%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LYANTV+SGG+TM+PGIADRMQKEI+ALAP T+KIKIIAPPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 347

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  155 bits (377), Expect = 2e-38
 Identities = 70/88 (79%), Positives = 80/88 (90%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 334
           DIRK LY+N V+SGG+TM+PGIADRMQKEI  LA +++K+K+IAPPERKYSVWIGGSILA
Sbjct: 62  DIRKDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILA 121

Query: 333 SLSTFQQMWISKEEYDESGPGIVHRKCF 250
           SLSTFQQMWI+KEEY E GP IVHRKCF
Sbjct: 122 SLSTFQQMWIAKEEYHEYGPPIVHRKCF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 16/104 (15%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITA----------------LAPSTIKIKIIA 382
           D+R+ LY N V+SGG+TM+     R+Q++I                  + P  I+ ++I+
Sbjct: 237 DVRRPLYKNIVLSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVIS 296

Query: 381 PPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 250
              ++Y+VW GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 297 HHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/65 (36%), Positives = 45/65 (69%), Gaps = 3/65 (4%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKII---APPERKYSVWIGGS 343
           DIR  L+ + +++GG T+  G  +R+ +E+ +  P ++++K+I   +  E++++ WIGGS
Sbjct: 166 DIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGS 225

Query: 342 ILASL 328
           ILASL
Sbjct: 226 ILASL 230


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 47.2 bits (107), Expect = 8e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = -1

Query: 504 KHLYANTVMSGGTTMYPGIADRMQKEITA-LAPSTIKIKIIAPPERKYSVWIGGSILAS- 331
           K LY   V+ G T+         Q  +TA       KI+I  PP RK+ V++GG++LA  
Sbjct: 322 KQLYLERVLKGDTSKLSSGMGMEQIPLTADYLLQKFKIRIEDPPRRKHMVFMGGAVLADI 381

Query: 330 LSTFQQMWISKEEYDESG 277
           +      W++++EY+E G
Sbjct: 382 MKDKDSFWMTRKEYEEKG 399


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPGIADRMQKEITALAPST-------IK-IKIIAPP-ERKYS 361
           D RK L  N V+ GGT M PG   R+ +EI  L  S        IK +K+  PP     +
Sbjct: 72  DTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANIT 131

Query: 360 VWIGGSILASLSTFQQMWISKEEYDE 283
            W+GG+I  SL        ++E Y +
Sbjct: 132 AWLGGAIFGSLEVLADRSTTRERYQQ 157


>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
          Length = 367

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -1

Query: 513 DIRKHLYANTVMSGGTTMYPG 451
           D+R+ LY+N V+SGG+T++ G
Sbjct: 271 DLRRVLYSNIVLSGGSTLFKG 291


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 451 YRRQDAEGDHRPRALDHQDQDHRSPREE 368
           +RRQDA  DHR +  DH  QD   PR++
Sbjct: 664 HRRQDA--DHRRQDADHHRQDVVHPRQD 689


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 341 MDPPIHTEYFLSGGAMILILMVEGARAVISFCILSAIPGYMV-VPPD 478
           +DPP+  +Y L+GG  ++   ++       FCI     G++V  PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQ---GFVVPTPPE 801


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 489 NTVMSGGTTMYPGIADRMQKEITALAP 409
           N  ++GG TMY     R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158


>SB_10094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 492 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 373
           AN V+     +   + +R+ KE+  L     +K KIIAPPE
Sbjct: 44  ANPVIHPARKVPVSLGERLDKELNRLTELGIVKEKIIAPPE 84


>SB_20153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 492 ANTVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPE 373
           AN V+     +   + +R+ KE+  L     +K KIIAPPE
Sbjct: 44  ANPVIHPARKVPVSLGERLDKELNHLTELGIVKEKIIAPPE 84


>SB_34211| Best HMM Match : DUF1103 (HMM E-Value=6.4)
          Length = 126

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 448 RRQDAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFP 329
           RRQ     HR R  D +D+D R      L  DR+ +  +P
Sbjct: 4   RRQGTATIHRYRQSDLRDRDRRRVLPRFLEQDRFDNSDYP 43


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 154 SGITRYNVLTVAFRTRTSTTPHSTGVT 234
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,008,235
Number of Sequences: 59808
Number of extensions: 282129
Number of successful extensions: 938
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)