Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    28   0.061
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.75 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.3  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.2  

>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 0.061
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = -1

Query: 256 VQIFGVYQDLLSSMTSGVISTRPVFVKFIHSIFTRLSLHCV---VKHEC 119
           VQI  + Q+++     G  +    F K +  I T+ S  C+   V H+C
Sbjct: 46  VQILALLQEIIPKSYFGTTTNLKRFYKVVEKILTQSSFECIHLSVLHKC 94


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 7   TTTSSRMNAKPVPASRNCLENETLKIPK 90
           T+TSS  + KP  +  N L  ET+ +P+
Sbjct: 431 TSTSSTNSNKPNSSDLNMLIKETMPLPR 458


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 269  AYGGSWENGKLVLSWP 316
            A G  W+N K +  WP
Sbjct: 1308 APGLHWDNNKNICDWP 1323


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 4   KTTTSSRMNAKPVPASRN 57
           +TTT S   A P PA  N
Sbjct: 447 RTTTVSTTEAPPAPAVSN 464


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,220
Number of Sequences: 336
Number of extensions: 2453
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)