Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    28   0.77 
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    28   0.77 
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    27   1.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   7.2  

>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 164 HLYPPESALRSETRMLGRLLKQIPDFGIFRVSFSRQFL 51
           HLY     +R  T  L  L  +I  +G++RVS +  FL
Sbjct: 92  HLYIATETVRPVTTELNELSAEIKTYGLWRVSAALSFL 129


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +1

Query: 28  NAKPVPASRNCLENETLK----IPKSGICFRRRPSIRVSLRNAD 147
           N KP+  S N L NE+ +    + KSG+C+  R     +L   D
Sbjct: 32  NNKPMSGSENTLNNESHEMSQILKKSGLCYDPRMRFHATLSEVD 75


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 73  TLKIPKSGICFRRRPS 120
           TLKIP S ICF RR S
Sbjct: 468 TLKIPDSDICFTRRRS 483


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 340  ATLQWAANESKIKSSYTDVLSVRSHDR 420
            A L W A   KI+S    +LS+ SH +
Sbjct: 1176 AVLYWFATLHKIRSFLVHLLSINSHGK 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,197
Number of Sequences: 5004
Number of extensions: 37846
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)