Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045           28   5.5  
05_07_0357 - 29533496-29533556,29533638-29533770,29533857-295339...    27   7.3  
07_03_0298 + 16384922-16385383,16387540-16388562                       27   9.7  
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146...    27   9.7  

>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
          Length = 1294

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 374 ILDSFAAHC--SVAKPSRRLRLATTKL--AFHFPKIPHKPDLAGSNLWRLS 234
           ++DS   H   +V + S+ LRL  + L   FH PKI H   L   +L R+S
Sbjct: 617 LIDSNLFHAVENVMEQSKSLRLLQSNLENTFHLPKIAHLKHLCYIDLPRIS 667


>05_07_0357 -
           29533496-29533556,29533638-29533770,29533857-29533953,
           29534073-29534141,29534221-29534378,29534483-29534527,
           29534598-29534625
          Length = 196

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 278 GSWENGKLVLSWPVSDVLMVLQHYNGQQTNPKSRVHIQTFYP 403
           G  +  ++VL  P SD    +   +GQ+T  K  VH+ T +P
Sbjct: 104 GKRKVAEIVLKTPSSDKKAKIATPSGQKTGDKKGVHVATPHP 145


>07_03_0298 + 16384922-16385383,16387540-16388562
          Length = 494

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 152 PESALRSETRMLGRLLKQIPDFGIFRVSF 66
           P  A+R +   LG +   I  FG+F+V+F
Sbjct: 54  PLEAIREQQAKLGSVFTAIAPFGLFKVTF 82


>03_05_0354 +
           23411485-23411802,23411886-23412176,23414610-23414675,
           23415186-23415645,23415963-23416189,23416362-23416649,
           23416955-23416966
          Length = 553

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 190 PVFVKFIHSIFTRLSLHCVV 131
           PVFV+ IHS   R S +C+V
Sbjct: 435 PVFVQVIHSSHVRSSKYCIV 454


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,258,458
Number of Sequences: 37544
Number of extensions: 263075
Number of successful extensions: 658
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)