Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)                34   0.065
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_6769| Best HMM Match : rve (HMM E-Value=3.5e-19)                    29   2.5  
SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)             28   5.7  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    28   5.7  
SB_46637| Best HMM Match : Toxin_16 (HMM E-Value=1.6)                  27   7.5  
SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_15601| Best HMM Match : Toxin_16 (HMM E-Value=0.24)                 27   7.5  

>SB_26181| Best HMM Match : DUF963 (HMM E-Value=0.00098)
          Length = 620

 Score = 34.3 bits (75), Expect = 0.065
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +3

Query: 405 TIP*PLGLR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLRL 542
           T P PL       LR +  LR ++HLR ++ LR + H  L+ H RL
Sbjct: 264 TSPSPLTXXXXLHLRLLLHLRLLLHLRLLFHLRLLLHFRLLLHFRL 309



 Score = 33.5 bits (73), Expect = 0.11
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 420 LGLR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLRL 542
           L LR +  LR ++ LR ++H R +   R + H  L+ HLRL
Sbjct: 281 LHLRLLLHLRLLFHLRLLLHFRLLLHFRLLLHLRLLLHLRL 321



 Score = 32.3 bits (70), Expect = 0.26
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 420 LGLR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLRL 542
           L LR +  LR +  LR + HLR +   R + H  L+ HLRL
Sbjct: 275 LHLRLLLHLRLLLHLRLLFHLRLLLHFRLLLHFRLLLHLRL 315



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 420 LGLR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLRL 542
           L  R +   R +  LR ++HLR +  LR + H  L+ HLRL
Sbjct: 299 LHFRLLLHFRLLLHLRLLLHLRLLLHLRFLLHLRLLLHLRL 339



 Score = 31.5 bits (68), Expect = 0.46
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 420 LGLR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLRL 542
           L  R +  LR +  LR ++HLR +  LR + H  L+ H RL
Sbjct: 305 LHFRLLLHLRLLLHLRLLLHLRFLLHLRLLLHLRLLLHFRL 345



 Score = 31.1 bits (67), Expect = 0.61
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 420 LGLR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLR 539
           L LR +  LR +   R ++H R +  LR + H  L+ HLR
Sbjct: 287 LHLRLLFHLRLLLHFRLLLHFRLLLHLRLLLHLRLLLHLR 326



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 426 LR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLRL 542
           LR +   R +   R ++HLR +  LR + H   + HLRL
Sbjct: 295 LRLLLHFRLLLHFRLLLHLRLLLHLRLLLHLRFLLHLRL 333


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 30.7 bits (66), Expect = 0.80
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +3

Query: 426 LR*IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHL 536
           +R ++ +R +Y +  + H+R +Y +R +CH   + H+
Sbjct: 30  VRWLYHVRWLYHVSWLYHVRWLYHVRWLCHVSWVHHV 66


>SB_6769| Best HMM Match : rve (HMM E-Value=3.5e-19)
          Length = 577

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 236 INAKDLNLPGPAYGGSWENGKLVLSWPVSDVLMVLQHY 349
           +N KD  +P  AY G WE  KL  +   + +    QH+
Sbjct: 383 LNGKDFLIPVDAYSGFWEVMKLTQATAANVINKTKQHF 420


>SB_16224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1127

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 221 RQEVLINAKDLNLPGPAYGGSWENGKLVLSWPV 319
           R + L + +D  +P P Y GS  NG L+ +W V
Sbjct: 22  RNKSLGDIRDNAVPPPKYKGSGNNGLLLQTWSV 54


>SB_39837| Best HMM Match : Ion_trans (HMM E-Value=8.5e-12)
          Length = 622

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 435 IHRLRQIYLLRQIIHLRQIYRLRQICHQHLIQHLR 539
           ++ +R +Y +R + H+R +Y +  + H   + H+R
Sbjct: 118 LYHVRWLYYVRWLYHVRWLYHVSWLYHVRWLYHVR 152



 Score = 27.9 bits (59), Expect = 5.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +3

Query: 426 LR*IHRLRQIYLLRQIIHLRQIYRLRQICH 515
           +R ++ +R +Y +  + H+R +Y +R +CH
Sbjct: 127 VRWLYHVRWLYHVSWLYHVRWLYHVRWLCH 156


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 444 LRQIYLLRQIIHLRQIYRLRQICHQHLIQH 533
           L+++  L+Q+ HL+Q+  L+Q+ H   ++H
Sbjct: 145 LQRVQYLQQLEHLQQLEHLQQLKHLQQLEH 174


>SB_46637| Best HMM Match : Toxin_16 (HMM E-Value=1.6)
          Length = 131

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 375 DFGFVCCPL*CCKT 334
           D GF CCP+ CC++
Sbjct: 19  DRGFTCCPVTCCRS 32



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 375 DFGFVCCPL*CCKT 334
           D GF CCP+ CC++
Sbjct: 49  DRGFTCCPVTCCRS 62


>SB_17957| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 892

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 336 TIKTSETGHDKTSFPFSQDPP*AGPGRFKSLA 241
           T  TS  GHD T+F  S+D P  G   F SL+
Sbjct: 472 TACTSPDGHDSTAFTLSKDHPDRG-NSFMSLS 502


>SB_15601| Best HMM Match : Toxin_16 (HMM E-Value=0.24)
          Length = 358

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 375 DFGFVCCPL*CCKT 334
           D GF CCP+ CC++
Sbjct: 6   DRGFTCCPVTCCRS 19



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 375 DFGFVCCPL*CCKT 334
           D GF CCP+ CC++
Sbjct: 126 DRGFTCCPVTCCRS 139



 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 375 DFGFVCCPL*CCKT 334
           D GF CCP+ CC++
Sbjct: 186 DRGFTCCPVTCCRS 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,096,812
Number of Sequences: 59808
Number of extensions: 290834
Number of successful extensions: 910
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)