Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U28731-9|AAA68301.2|  437|Caenorhabditis elegans Hypothetical pr...    27   6.6  

>U13072-2|AAK31397.2|  380|Caenorhabditis elegans Hypothetical
           protein C07D10.5 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 119 LGRLLKQIPDFGIFRVSFSRQFLEAGTGLAFILLDV 12
           LG LL    D+ +  +S  +++LE GTG + I LD+
Sbjct: 278 LGTLLFLFLDYYLDVISLEKEYLEIGTGESLIKLDI 313


>U28731-9|AAA68301.2|  437|Caenorhabditis elegans Hypothetical
           protein F12A10.8 protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 295 SIFPRSPISRTWQVQIFGVYQD 230
           S FPRS IS+TW     GV +D
Sbjct: 94  SNFPRSNISKTWDFSDIGVKKD 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,970,798
Number of Sequences: 27780
Number of extensions: 214296
Number of successful extensions: 597
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)