Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   1.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   1.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.1  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 179 NKYRPGANNTTGHRRQEVLINAKDLNLPGPAYGGSW 286
           N Y    NN      +  +IN + + +P P Y G++
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +2

Query: 179 NKYRPGANNTTGHRRQEVLINAKDLNLPGPAYGGSW 286
           N Y    NN      +  +IN + + +P P Y G++
Sbjct: 103 NNYNNNYNNNYKKLYKNYIINIEQIPVPVPVYYGNF 138


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = -1

Query: 298 LSIFPRSPISRTWQVQIFGVYQDLLSSMTSGVISTRPVFVKFIHSIFTRLS 146
           LS     PI      +  G Y+ L   M S  I+ RP   + I  I T +S
Sbjct: 265 LSAKGHRPIDDNIDDEFKGTYKTLYKQMWSQNITERPTTNEVITKIDTLIS 315


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 444 LRQIYLLRQIIHL 482
           L+QI++L Q+IHL
Sbjct: 7   LQQIFILLQMIHL 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,534
Number of Sequences: 438
Number of extensions: 2631
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)