Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31288
         (544 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42600.1 68416.m04422 hypothetical protein                          30   0.87 
At1g61240.2 68414.m06901 expressed protein contains Pfam profile...    29   1.5  
At1g61240.1 68414.m06900 expressed protein contains Pfam profile...    29   1.5  
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family...    29   2.0  
At5g08415.1 68418.m00991 lipoic acid synthase family protein sim...    27   8.1  
At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp...    27   8.1  

>At3g42600.1 68416.m04422 hypothetical protein
          Length = 219

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 131 HYAMQTQAGKDA----MDELNKYRPGANNTTG 214
           HY + T+  +D+    MDE+ +YRP  NNT G
Sbjct: 141 HYPLGTEETRDSCEQFMDEIKQYRPTYNNTYG 172


>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 113 DQAFVFHYAMQTQAGKDAMDELNKYRPGANNTTG 214
           D  ++FH  +QT  G    D+ N  R G N   G
Sbjct: 321 DSEYIFHQGIQTLGGSGYPDKKNSARSGVNRRRG 354


>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
           PF05212: Protein of unknown function (DUF707)
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 113 DQAFVFHYAMQTQAGKDAMDELNKYRPGANNTTG 214
           D  ++FH  +QT  G    D+ N  R G N   G
Sbjct: 321 DSEYIFHQGIQTLGGSGYPDKKNSARSGVNRRRG 354


>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 615

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/68 (25%), Positives = 34/68 (50%)
 Frame = +2

Query: 98  FASEDDQAFVFHYAMQTQAGKDAMDELNKYRPGANNTTGHRRQEVLINAKDLNLPGPAYG 277
           +  +D +  V  +    +  +D  +E N Y+PG+ NTT     +V+ + KD+++      
Sbjct: 283 YPGQDSKQRVIIFGDMGKGERDGSNEYNDYQPGSLNTT----DQVIKDLKDIDIVFHIGD 338

Query: 278 GSWENGKL 301
            ++ NG L
Sbjct: 339 LTYSNGYL 346


>At5g08415.1 68418.m00991 lipoic acid synthase family protein
           similar to lipoic acid synthase from Arabidopsis
           thaliana [gi:3928758], from Mus musculus [gi:14669826]
           Pfam profile PF04055: radical SAM domain protein
          Length = 394

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 353 HCSVAKPSRRLRLATTKLAFHFPK 282
           HCS+ KP+  + ++T KL  H  K
Sbjct: 4   HCSITKPTFSISISTQKLHHHSSK 27


>At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam profile: PF01805
           surp module
          Length = 679

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 34  KPVPASRNCLENETLKIPKSGICFRRRPSIRVSLRNA 144
           +P P  R+C+EN  L + K+G+   R+  + +S+ +A
Sbjct: 396 EPPPEIRSCVENTALIVSKNGLEIERK-MMELSMNDA 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,536,157
Number of Sequences: 28952
Number of extensions: 205403
Number of successful extensions: 515
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1013649368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)