Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31287
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)                 30   1.9  
SB_17989| Best HMM Match : PAN (HMM E-Value=0.00015)                   29   2.5  
SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35)                29   3.4  
SB_4891| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_22713| Best HMM Match : DUF552 (HMM E-Value=0.91)                   28   5.9  
SB_49373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)                     28   5.9  
SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)               28   7.7  
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)                      28   7.7  
SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 380  AHSPGHLLKVFPSASITSPTRTDTSPLV-MLSPLPHQCLSRSLVLLPTSPRT 532
            A+ P H   V  SA+  SP+ TDTS +V  +S  PH  ++  +     +P T
Sbjct: 2226 ANIPLHSSSVTSSAAFCSPSNTDTSRVVGRVSQAPHNSITSRINESEVAPST 2277


>SB_59064| Best HMM Match : Adeno_E1A (HMM E-Value=9.3)
          Length = 336

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 382 SFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQ 498
           SF+  S EG P    +   E+  Q  G+ IPTSPPV E+
Sbjct: 67  SFASVSEEGSPAKKIHFERED--QDPGDQIPTSPPVAER 103


>SB_17989| Best HMM Match : PAN (HMM E-Value=0.00015)
          Length = 99

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
 Frame = +3

Query: 66  CRPSPV*K*ILQE---EPIPVQHI----PAVRSRDHSYSVSAHPDLLYCPRQSSTQ 212
           C PS + +  L+    +  PV+H+       +SRD  YS++ H D L C   +ST+
Sbjct: 22  CHPSSIDRHQLKGHLLDSFPVEHMHFCFERCKSRDKCYSINFHKDSLVCELNNSTK 77


>SB_20653| Best HMM Match : Sialidase (HMM E-Value=0.35)
          Length = 572

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 410 FPSASITSPTRTDTSPLVMLSPLPHQCLSRSLVLLPTSP 526
           +P + ITS   +D S   + S LP  C  +   + PT+P
Sbjct: 166 YPRSDITSMANSDVSSGAIYSSLPSVCPPKGTHMTPTAP 204


>SB_4891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = +3

Query: 105 EPIPVQHI----PAVRSRDHSYSVSAHPDLLYCPRQSSTQ 212
           +  PV+H+       +SRD  YS++ H D L C   +ST+
Sbjct: 42  DSFPVEHMHFCFERCKSRDKCYSINFHKDSLVCELNNSTK 81


>SB_29018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1047

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
 Frame = +1

Query: 265 PDGSYTYFYETNHGIAAQEQGVPRNLGGN--PPAVPVVAQGSFSWTSPEGVPISVNYVAD 438
           P G   Y  + + G+  Q+   P ++  N  PP +P+ A    +   P  +P +      
Sbjct: 671 PQGIPYYGPQASGGVIFQQGPYPSHMPANAPPPNIPIQANFPRNIPPPNYIPPTQQMSFQ 730

Query: 439 ENGY-QPTGNAIPTSPPVPE 495
            + Y +P  N IPT   V E
Sbjct: 731 HSPYNRPPPNVIPTGNMVIE 750


>SB_22713| Best HMM Match : DUF552 (HMM E-Value=0.91)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 398 LLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRSLVLLPTSPRTFLSRSNR*ISQTYFG 577
           +L+    A +   T +   P + +  +  + L RS+ L P   +  L RSN   S    G
Sbjct: 151 ILRSLRQAKLAESTVSRVDPTLGVLHILKEVLERSVRLDPLKAQLILMRSNVLNSGKSLG 210

Query: 578 LGLHRMNKNK*KQYW 622
           LGL  + K   K+ W
Sbjct: 211 LGLVYIYKYVEKKVW 225


>SB_49373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 362 FPSLHRAHSPGHLLKVFPSASITSPT--RTDTSPLVMLSPLPHQCLSR 499
           F  L +AH+P H+L VFP+      T  +  + P V++     +C +R
Sbjct: 3   FLYLSQAHTPPHILLVFPAKKCNRGTLSKNWSGPTVLIELAKGKCQTR 50


>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
          Length = 875

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 446 DTSPLVMLSPLPHQCLSRSLVLLPTSPRTFLSRSNR*ISQTYFGLGLH 589
           D   L+ ++ L HQ LS+ L L+P    T +  +N  +S  Y  + LH
Sbjct: 675 DLENLLAVNKLTHQLLSKHLALVPY--ETMVREANHSVSAPYGRITLH 720


>SB_56163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 346 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPP 486
           GNPP  PV    +F +  P     +  Y A    + P G ++P  PP
Sbjct: 105 GNPPYPPVDQYSAFPY--PPQDQQAPPYPAQNQYWNPQGTSLPPPPP 149


>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
          Length = 1467

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 346 GNPPAVPVVA--QGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 483
           G  PA P  +    S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 448 GYSPASPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 496


>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 439 ENGYQPTGNAIPTSPPVPEQ 498
           EN YQP     P SPP P+Q
Sbjct: 117 ENSYQPVELFAPNSPPKPQQ 136


>SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)
          Length = 644

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 343 GGNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGY 450
           G  P  +PV +  +  W    G PIS+N     N Y
Sbjct: 146 GSLPDYIPVYSPETIVWGQSSGAPISINSSVIVNAY 181


>SB_5593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +1

Query: 361 VPVVAQGSFSWTSPEGVPISVNYVADENGY 450
           +PV + G+  W    G PIS+N     N Y
Sbjct: 171 IPVYSPGTIVWGQSSGAPISINSSLIVNAY 200


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,042,251
Number of Sequences: 59808
Number of extensions: 487851
Number of successful extensions: 1430
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)