Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31287
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid elon...    31   0.72 
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   2.9  
U41277-3|AAA82474.1|  154|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical ...    28   5.1  
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    28   6.8  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    27   8.9  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    27   8.9  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   8.9  

>U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid
           elongation protein 3 protein.
          Length = 320

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -1

Query: 579 NPKYVCEIYRLLLERNVLGDVGKSTSDLLRHWWGSGDSITSGLVSVLV 436
           NPKY  E Y + L      D  +ST+ +  HW+    SIT+ +V V V
Sbjct: 7   NPKYGLENYSIFLPFETSFDAFRSTTWMQNHWY---QSITASVVYVAV 51


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 352 PPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIAKN 531
           PP  P++   S     P   P ++ +V + +   PT    P  PP P  I+ A A  A  
Sbjct: 321 PPPPPLLMNTSIVHQLPAEAPSTIQFV-EPSAAPPTNIPPPPPPPPPMVISSAAASFAAP 379

Query: 532 IP 537
            P
Sbjct: 380 AP 381


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +1

Query: 346 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARAL 513
           G  P  PVV QG   W+  +  P      A E    PT  A    PP P Q A  L
Sbjct: 70  GQDPTTPVVPQGGTGWSKSDN-PNG----AAEPPQTPTNQAPAVPPPPPPQPANDL 120


>U41277-3|AAA82474.1|  154|Caenorhabditis elegans Hypothetical
           protein C06E4.4 protein.
          Length = 154

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 253 NEINPDGSYTYFYETNHGIAA-QEQGVPRNLGGNPPAVP 366
           N +NP    T F E   G+++ Q Q    N+G NP A+P
Sbjct: 98  NTVNPGVVATGFMEVATGLSSEQSQTFYDNVGSNPSAIP 136


>AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical
           protein C08G5.5 protein.
          Length = 99

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 400 PEGVP--ISVNYVADENGYQPTGNAIPTSPPVPEQIARALAYIA 525
           P G+P  +S +Y A      PT    P++PP+P   +   AY A
Sbjct: 44  PSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAYSA 87


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 627 QRQYCFHLFLFIRCKPNPKYVCEIYRLLLER 535
           + QYC H  LF +   + +Y+C    +L ER
Sbjct: 96  KEQYCDHNKLFAKASSSVEYMCATKHVLFER 126


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 377 RAHSPGHLLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRS 502
           R   P  L      AS++S + + + P + +SPLP+  +SR+
Sbjct: 77  REKHPKKLKMELAHASLSSASSSQSPPSLPISPLPYHIVSRN 118


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 262  NPDGSYTYFYETNHGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 438
            N DG  + F E   G +    G P   L    P+   ++ G +S +SP+    S +Y   
Sbjct: 1535 NTDGGASPFNEG--GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1592

Query: 439  ENGYQPTGNAIPTSPPVPEQIARALAY 519
               Y PT  A   SP  P     + +Y
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1619



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 349  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 483
            +P A       S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1600 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +1

Query: 262  NPDGSYTYFYETNHGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 438
            N DG  + F E   G +    G P   L    P+   ++ G +S +SP+    S +Y   
Sbjct: 1542 NTDGGASPFNEG--GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1599

Query: 439  ENGYQPTGNAIPTSPPVPEQIARALAY 519
               Y PT  A   SP  P     + +Y
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1626



 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +1

Query: 349  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 483
            +P A       S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1607 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 377 RAHSPGHLLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRS 502
           R   P  L      AS++S + + + P + +SPLP+  +SR+
Sbjct: 79  REKHPKKLKMELAHASLSSASSSQSPPSLPISPLPYHIVSRN 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,460,897
Number of Sequences: 27780
Number of extensions: 365986
Number of successful extensions: 1139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)