Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31285
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    43   1e-05
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    31   0.036
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   0.58 
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    26   1.3  
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    25   2.3  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    25   2.3  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    25   3.1  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    24   5.4  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    24   5.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   5.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   7.1  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.1  
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    24   7.1  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 37/54 (68%)
 Frame = +2

Query: 173 ELQALIDENDPENSGKINFDGFCNIASHFLEEEDAEPMQQELKEAFRLYDREGN 334
           ELQ +I+E D + +G I+F  F  + +  +++ D E   +E++EAF+++D++GN
Sbjct: 49  ELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNE---EEVREAFKVFDKDGN 99


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 31.5 bits (68), Expect = 0.036
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 73  KAFQMLDTTKSGYIDVLKISTILNTMGQLFDD 168
           KAF++ D   SGYI+  K +  + T+G+   D
Sbjct: 82  KAFRVFDKDNSGYIETAKFADYMKTLGEKLSD 113



 Score = 25.4 bits (53), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 170 HELQALIDENDPENSGKINFDGF 238
           +E+Q ++ E DP NSG  ++  F
Sbjct: 114 NEVQLMVQEADPTNSGSFDYYDF 136


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 0.58
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 197 FHR*VLEVRESSNSCPIVLRMVEIFSTSM*PDFVVSNIWNALRSMAIFCSSSEYHVAR 24
           F+  +  +R S  +   +LR   I S S+  DF+    W+  R + +F   SE+++ +
Sbjct: 491 FYEFLCFLRPSLINFDTILRKSAITSFSVLWDFIYETSWHIERWLKVFSVQSEFYILK 548


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 37  YSDDEQKMAMLRKAFQMLDTTKSGYIDVLK 126
           Y +DE     +R+ +Q+LD T   +  V+K
Sbjct: 25  YGEDENVPQNIRRCYQLLDMTSRSFAVVIK 54


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 245 IASHFLEEEDAEPMQQELKEA 307
           IAS F E ED  P+ QELK A
Sbjct: 181 IASKFHETEDRVPLLQELKLA 201


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 290 QELKEAFRLYDREGN 334
           QELKEAF L D++G+
Sbjct: 48  QELKEAFALLDKDGD 62


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 206 ENSGKINFDGFCNIASHFLEEEDAEPMQQELKEAFRLYDRE 328
           ENS   N D    +A+ FL+E + E  ++E +  + L  ++
Sbjct: 435 ENSADTNDDIVNQVAAQFLDEREFETDEEEEESQYLLSTKD 475


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 79  MLYAAWPSFVHHRNTM 32
           M+ + WPSF H  NTM
Sbjct: 160 MIRSIWPSFSHIPNTM 175


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 79  MLYAAWPSFVHHRNTM 32
           M+ + WPSF H  NTM
Sbjct: 162 MIRSIWPSFSHIPNTM 177


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 224 NFDGFCNIASHFLEEEDAEPM 286
           + DGF ++ASHF     AE +
Sbjct: 269 SIDGFVSVASHFSSASTAESL 289


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +2

Query: 191 DENDPENSGKINFDGFCNIASHFLEEEDAEPMQQELKEAFRLYDR 325
           D N+PE+       GF +I S  +E  D E   +       +YDR
Sbjct: 645 DCNNPESFSLFVDAGFISITSQNVETNDKESNSESETLYHLIYDR 689


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 307 SFFQFLLHGFSVFLFKEMGSNITEAIEVDL 218
           S  Q + H F++ LFK+   N  + +++ L
Sbjct: 245 SKIQSVNHEFNIALFKQTAKNFYDTLDISL 274


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 260 LEEEDAEPMQQELKEAFRLYDRE 328
           L  E  E  +Q++ EAF+L+D +
Sbjct: 27  LRVEITEEQRQDINEAFKLFDSD 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,472
Number of Sequences: 5004
Number of extensions: 28403
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)