Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31282
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                99   5e-36
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               31   1.00 
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            25   1.7  
SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)                     29   3.0  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   3.0  
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   5.3  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   7.0  
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   7.0  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 98.7 bits (235), Expect(2) = 5e-36
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +2

Query: 116 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 295
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 70.5 bits (165), Expect(2) = 5e-36
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +2

Query: 395 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 574
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 575 VK 580
           VK
Sbjct: 703 VK 704


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 129 TSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARLLKCPH 263
           T+K HT++P T  P    P N+ P + + +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213



 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 105 KFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 203
           K KT +  T+K +T++P T  P+   P   +PC
Sbjct: 100 KPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 129 TSKTHTSRPETPGPQPPSPCNVRP 200
           T+K HT++P T  PQ   P   +P
Sbjct: 68  TTKPHTTKPRTTKPQTTKPHTTKP 91



 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 114 TQQWVTSKTHTSRPETPGPQPPSPCNVRP 200
           T +  T+K  T++P T  P    PC  +P
Sbjct: 108 TNKPYTTKPRTTKPRTTKPHTTKPCTTKP 136


>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +3

Query: 117 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 272
           +Q V S      P  P P PP+PC + PC +T     +VVH+  L    P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 24.6 bits (51), Expect(2) = 1.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +3

Query: 180 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMVKSMK 338
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  +  +K +K
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVK 450



 Score = 23.8 bits (49), Expect(2) = 1.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 162 PGPQPPSPCNVRP 200
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_605| Best HMM Match : Calx-beta (HMM E-Value=0)
          Length = 1958

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 151 LEVCVFDVTHCCVLNLTTVRNDKIKKITIY 62
           + + +F VT+CC L LT +   + +++TIY
Sbjct: 14  VNLIIFTVTNCCFLVLTALIGFRDRQVTIY 43


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 206 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNG 325
           + G +M +G+PCKI   +   K G HG   +H+ G D  NG
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG 55


>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +2

Query: 320 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNG 448
           NG  Y   CP   N D    + EDY  +   D  YLT   D G
Sbjct: 400 NGHTYHMTCPGQTNFDPAKKRCEDYDCSG-RDVAYLTDQNDGG 441


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/84 (25%), Positives = 37/84 (44%)
 Frame = +2

Query: 347 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 526
           P +  + V   +  +++  D   +      ADN + RE+    + +L ++  T    G  
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343

Query: 527 LLCTVLKSCGEECVIAVKANTALD 598
              T  KS GEE V A ++  +LD
Sbjct: 344 SAATYGKSDGEENV-AQESEESLD 366


>SB_1052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
 Frame = +2

Query: 140  THFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKT-----GKHGHAKVHLV 304
            T  E+G   +    P QC+    + F+    RP + +  S ++      G     +  L 
Sbjct: 865  TRRESGQRVSHGLSPKQCAVSVVSSFMDSGARPRRFLPGSQARPRRFLPGSQPRPRRFLP 924

Query: 305  GIDIFNGKKYE--DICPSTHNMDVPHVKREDYQLTDISD-DGYLTLMADNGDLREDLKIP 475
             + +  G  Y   ++ P    +D+     + Y++ ++   D YL L  D GD    LK+ 
Sbjct: 925  VLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYRVLNLDPGDFYLDLKLDPGDFYPVLKLD 984

Query: 476  DGDLGTQLRTD 508
             GD    L+ D
Sbjct: 985  PGDFYPVLKRD 995


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -2

Query: 555 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 424
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 132 SKTHTSRPETPGPQPPSPCNV 194
           ++T T++PET  P+PP+P  +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185


>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +2

Query: 362 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 529
           +D+P+ K + + L  ++DD  L+    +  D   L E L  PD  +    R   D G E 
Sbjct: 37  LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94

Query: 530 LCTVLKSCGEEC 565
           LC  L+     C
Sbjct: 95  LCMTLRRFAYPC 106


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 126 VTSKTHTSRPETPGPQPPSPCNVRP 200
           VT K  T +P TP P  P P   RP
Sbjct: 768 VTPKPVTPKPVTPKPVTPKPVTTRP 792


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 132 SKTHTSRPETPGPQPPSP 185
           ++T T +P TP P PP+P
Sbjct: 288 TRTPTPKPRTPTPSPPTP 305


>SB_16428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 147 SRPETPGPQPPSPCNVRP 200
           +RP TPG +PP P N  P
Sbjct: 166 TRPTTPGMRPPEPINDAP 183


>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 589

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 114 TQQWVTSKTHTSRPETPGPQPP-SPCNVRPCVKTVSL 221
           T +   +K HTS   TPG   P SP +  P   T SL
Sbjct: 262 TPEMAVNKRHTSVSHTPGGVVPFSPASFSPAAATPSL 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,225,114
Number of Sequences: 59808
Number of extensions: 454475
Number of successful extensions: 1476
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)