Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31279
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              31   0.39 
SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    28   3.7  
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)                   27   8.5  

>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 422 MVSFNSFNLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLIIIYNLYD 279
           M+      +++F+L      L +FY ++ ++YVII  F L     L+D
Sbjct: 68  MIQVTPLMVLIFVLLICGLLLLLFYFYKYLVYVIIVLFALASCNGLFD 115


>SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 401 NLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLIII 294
           ++I+ I+  + T + +     +II +IIN  N+III
Sbjct: 559 SIIIIIIVIIMTYIIIIIIIIIIIIIIINIINIIII 594


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -3

Query: 422 MVSFNSFNLIVFILFYLSTGLTVFYTFRLIIYVIINDFNLIII 294
           +++  S  +I+ I+  + + +T+  +  +IIYV    FN+III
Sbjct: 231 IITIISLIIIIIIIIVIISMITIIISLIIIIYVTHIIFNIIII 273


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 422 MVSFNSFNLIVFILFYLSTGLTV-FYTFRLIIYVIINDFNLIIIYNLY 282
           +++ N+  L++ I+      LTV   T +L+I +II    LI+I N +
Sbjct: 138 VITINTHKLLIIIIINTHKLLTVIIITHKLLIVIIITHTLLIVIINTH 185


>SB_41346| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1264

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 401 NLIVFILFYLSTGLTVFYTFRLIIYVIINDFN 306
           N+  ++ F +   L  F+T  L I VII++FN
Sbjct: 667 NVSAYLFFVVFIILGTFFTLNLFIGVIIDNFN 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,113,670
Number of Sequences: 59808
Number of extensions: 59728
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)