Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31279
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   7.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   10.0 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   10.0 

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 359 TVFYTFRLIIYVIINDFNLIIIYNL 285
           T+FYT  LII  +   F  ++++ L
Sbjct: 236 TLFYTVNLIIPCVGISFLSVLVFYL 260


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 359 TVFYTFRLIIYVIINDFNLIIIYNL 285
           T+FYT  LII  +   F  ++++ L
Sbjct: 249 TLFYTVNLIIPCVGITFLTVLVFYL 273


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 359 TVFYTFRLIIYVIINDFNLIIIYNL 285
           T+FYT  LII  +   F  ++++ L
Sbjct: 240 TLFYTVNLIIPCMGISFLTVLVFYL 264


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 413 FNSFNLIVFILFYLSTGLTVFY 348
           F  FNLI+  +   S  L VFY
Sbjct: 215 FYVFNLILPCILINSVALLVFY 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,530
Number of Sequences: 438
Number of extensions: 1033
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)