Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31278
(635 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 384 e-107
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 376 e-105
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 376 e-104
SB_56| Best HMM Match : Actin (HMM E-Value=0) 375 e-104
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 356 7e-99
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 192 2e-49
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 186 2e-47
SB_54| Best HMM Match : Actin (HMM E-Value=0) 148 3e-36
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 135 2e-32
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 113 1e-25
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 98 6e-21
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 59 3e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 56 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 56 3e-08
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.002
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 38 0.007
SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.45
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.78
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 1.0
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 30 1.4
SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09) 30 1.8
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 29 2.4
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 29 3.2
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84) 28 5.5
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_55729| Best HMM Match : YajC (HMM E-Value=0.56) 28 7.3
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 28 7.3
SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6) 28 7.3
SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085) 28 7.3
SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9) 28 7.3
SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 27 9.7
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 384 bits (944), Expect = e-107
Identities = 177/181 (97%), Positives = 180/181 (99%)
Frame = +3
Query: 42 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 221
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 222 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 401
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 402 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLD 581
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE YALPHAILRLD
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLD 180
Query: 582 L 584
L
Sbjct: 181 L 181
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLTDYLMKILTER
Sbjct: 182 AGRDLTDYLMKILTER 197
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 376 bits (926), Expect = e-105
Identities = 174/179 (97%), Positives = 178/179 (99%)
Frame = +3
Query: 48 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 227
+DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 228 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 407
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 408 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE YALPHAILRLDL
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLTDYLMKILTER
Sbjct: 181 AGRDLTDYLMKILTER 196
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 376 bits (924), Expect = e-104
Identities = 173/181 (95%), Positives = 179/181 (98%)
Frame = +3
Query: 42 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 221
M DD++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 222 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 401
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 402 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLD 581
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE YALPHAI+RLD
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAIIRLD 180
Query: 582 L 584
L
Sbjct: 181 L 181
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLTDYLMKILTER
Sbjct: 182 AGRDLTDYLMKILTER 197
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 375 bits (922), Expect = e-104
Identities = 173/179 (96%), Positives = 178/179 (99%)
Frame = +3
Query: 48 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 227
+D+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 228 RGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 407
RGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 408 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE YALPHAILRLDL
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLTDYLMKILTER
Sbjct: 181 AGRDLTDYLMKILTER 196
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 356 bits (876), Expect = 7e-99
Identities = 163/168 (97%), Positives = 167/168 (99%)
Frame = +3
Query: 42 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 221
M DDD+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 222 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 401
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 402 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 545
TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYE 168
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 192 bits (468), Expect = 2e-49
Identities = 88/178 (49%), Positives = 122/178 (68%), Gaps = 3/178 (1%)
Frame = +3
Query: 60 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 233
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 234 ILTLKYPIEHGIITNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 410
+L + YP+++GI+ NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 411 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
MFE + +Y+AIQAVL+LYA G TG+V+DSGDGV+H P+YE +ALPH RLD+
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFALPHLTRRLDI 184
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 186 bits (452), Expect = 2e-47
Identities = 84/89 (94%), Positives = 86/89 (96%)
Frame = +3
Query: 48 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 227
DDDVAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 228 RGILTLKYPIEHGIITNWDDMEKIWHHTF 314
RGILTLKYPIEHGI+TNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 122 bits (293), Expect = 3e-28
Identities = 57/66 (86%), Positives = 62/66 (93%)
Frame = +3
Query: 387 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHA 566
N + M +IMFETFNSPAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPIYE YALPHA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 567 ILRLDL 584
I+RLDL
Sbjct: 138 IIRLDL 143
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLTDYLMKILTER
Sbjct: 144 AGRDLTDYLMKILTER 159
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 148 bits (359), Expect = 3e-36
Identities = 67/97 (69%), Positives = 80/97 (82%)
Frame = +3
Query: 294 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 473
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 474 ASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
ASGRTTG V D GDGVSHTVP+Y+ Y LPHA R+DL
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVYDGYWLPHATQRIDL 2225
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3
Query: 9 ASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 167
AS T+ F+ V +V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2080 ASVTKQQAAFEQNGGTV--VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLT YL +++TER
Sbjct: 2226 AGRDLTHYLQRLVTER 2241
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 135 bits (327), Expect = 2e-32
Identities = 57/88 (64%), Positives = 76/88 (86%)
Frame = +3
Query: 342 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 521
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD+GDGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 522 SHTVPIYEXYALPHAILRLDLGWSRLDR 605
SH+VPIYE +A+PH+I+R D+ + R
Sbjct: 186 SHSVPIYEGFAMPHSIMRTDIAGRDVSR 213
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 113 bits (272), Expect = 1e-25
Identities = 53/59 (89%), Positives = 55/59 (93%)
Frame = +3
Query: 408 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
IMFE FNSPA+YVAIQAVLSLYASGRTTG+V DSGDGVSH VPIYE YALPHAILRLDL
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYALPHAILRLDL 59
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = +1
Query: 586 AGRDLTDYLMKILTER 633
AGRDLTDYLMK++TER
Sbjct: 60 AGRDLTDYLMKLMTER 75
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 97.9 bits (233), Expect = 6e-21
Identities = 43/111 (38%), Positives = 72/111 (64%)
Frame = +3
Query: 252 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNS 431
PI+ G+I +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 432 PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
PA ++ +VL+ +A+GR+ G+V+DSG + VP+++ Y L AI+R L
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVIDSGATQTSAVPVHDGYVLQQAIVRSPL 113
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.3 bits (137), Expect = 3e-09
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +3
Query: 66 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 167
LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.4 bits (130), Expect = 2e-08
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 IPASPTQTHTKFKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 182
IP + + ++ FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 683 IPRTKKRRYS-FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Query: 183 --MGQKD-SYVGDEAQSKRGILTL 245
+ KD GD A +K G++ L
Sbjct: 742 DNVNVKDYKKYGDAAVAKSGVMHL 765
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/49 (42%), Positives = 27/49 (55%)
Frame = +3
Query: 453 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEXYALPHAILRLDLGWSRL 599
Q LSLYASG T G+ L SG + IYE + L H + L++G L
Sbjct: 767 QLSLSLYASGMTLGVCLSSGFSCTQAAVIYEGHTLNHTLQTLEIGGHHL 815
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 2e-08
Identities = 25/60 (41%), Positives = 34/60 (56%)
Frame = +3
Query: 180 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLL 359
G+ D ++GDEA K T K+PI H I+ +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
Score = 32.3 bits (70), Expect = 0.34
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 489 TGIVLDSGDGVSHTVPI 539
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 55.6 bits (128), Expect = 3e-08
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Frame = +3
Query: 57 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 236
+A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 233 MATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKDY 284
Query: 237 LTLKY--PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 410
L Y P + G + NWD ++IW +TF E + M +I
Sbjct: 285 SALFYVLPFQKGFLVNWDVEKQIWDYTFGKE--------------------GLEDAMDEI 324
Query: 411 MFETFNSPAMYVAIQAVLSLY------ASGRTTGIVLDSGDGVSHTVPIYEXYALPHAIL 572
+FE +N A+ A LS Y S +V+D+G +H VP++ + A+
Sbjct: 325 LFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIVPVFNGKVIKKAVR 384
Query: 573 R 575
R
Sbjct: 385 R 385
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 50.8 bits (116), Expect = 9e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -1
Query: 164 VARATHDGREDGAGRVVAGETGLAHAGAIVDYKRSNIVV 48
+AR+ DG E+G+G +V+GETGLAH GAI+D + +I+V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Frame = +3
Query: 297 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 476
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 477 SGRTTGI----VLDSGDGVSHTVPIYEXYALP 560
+GI V D D + T Y LP
Sbjct: 572 YSAVSGIVEQRVTDGTDEIHSTDVNLAKYNLP 603
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 8/54 (14%)
Frame = +3
Query: 447 AIQAVLSLYASG-------RT-TGIVLDSGDGVSHTVPIYEXYALPHAILRLDL 584
A +AVL+L AS RT TG V+DSGDGV+H +P+ E Y + I + +
Sbjct: 40 ATKAVLALAASWTSRQVGERTLTGCVIDSGDGVTHVIPVAEGYVIGSCIKHIPI 93
>SB_25667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 73 STMAPACARPVSPATTRPAPSSRPSWVALATRA*WSVWARKTPTWVTRP 219
S P+ R TT+P P +PSWV + + W TW RP
Sbjct: 36 SPSKPSDTRIADTTTTKPFPGYQPSWVKVK----YGAWYLNPKTWKARP 80
>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 739
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 37 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 141
S C T+L+R T+ APA +P+SPAT P +R
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGPPTR 667
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 243 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANRE 395
L+ P + ++T+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 384 ANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 500
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 37 SRCATTMLLR-L*STMAPACARPVSPATTRPAPSSR 141
S C T+L+R L +T APA P SPAT P R
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPATPASGPPIR 56
>SB_54914| Best HMM Match : Patched (HMM E-Value=1.3e-09)
Length = 645
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = -1
Query: 404 GHLLPVGLGVEGGFGEQHGVLLGGDTQLIVEGVVPDLLHVIPVGDDTVLDGVLQSEDTSL 225
G +L V LG+ GFG V G + + GV+P L+ I + D ++ + +D SL
Sbjct: 157 GGILAVALGILAGFGLAMAV---GTPFISLAGVLPFLILGIGIDDMFIIINEMDRQDNSL 213
Query: 224 AL 219
++
Sbjct: 214 SV 215
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 28 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 141
T S C T+L+R T+ APA P SPAT P R
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 147
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 29.1 bits (62), Expect = 3.2
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = -2
Query: 529 VWE--TPSPESSTIPVVRPE-------AYSESTAWMATYMAGELKVSNMIWVIFSLLALG 377
VWE T P + T+P + + Y S +W+ L N ++++F +LG
Sbjct: 3 VWELSTTGPTNRTVPTIIIDYAICTEVLYKTSGSWIRICDI-VLLAPNAMFMVFLFYSLG 61
Query: 376 LRGASVSSTGCSSGATRSSL*KVWCQIFSMSSQLVMIPCSMGYFRVRIPLLLWAS 212
L A + T C T +L ++ ++++SQ+ + C + R +LL AS
Sbjct: 62 LAHAKLVGTRCPIVKTIYTLLLLYGIHYTLNSQVFAV-CVVSVARCFASMLLTAS 115
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 387 NREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 536
NR + +++ E S ++ + +L+LY RT D+ + HT P
Sbjct: 437 NRVEFVKLLLENGVSMGQFLTPERLLALYRGVRTCNATPDNNNRACHTTP 486
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +3
Query: 372 LNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIV 500
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_8336| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.84)
Length = 509
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 22 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 147
K T ++ ATT + +T PA P +P TT P ++ P+
Sbjct: 63 KPTNTTPPATTTPTKPTTTTPPATTTPTTPTTTTPPATTTPT 104
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 22 KHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAPSSRPS 147
K T ++ ATT + +T PA P P TT P ++ P+
Sbjct: 133 KPTTTTPPATTTPTKPTTTTPPATTTPTKPTTTTPPATTTPT 174
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 37 SRCATTMLLRL*STM-APACARPVSPATTRPAPSSR 141
S C T+L+R T+ APA P SPAT P R
Sbjct: 72 SSCLATLLVRPLETIPAPAPTTPTSPATPASGPPIR 107
>SB_55729| Best HMM Match : YajC (HMM E-Value=0.56)
Length = 654
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -1
Query: 569 DGVGQSVTFVDGYGVGDTISGVEHDTGGTTGG 474
DG G VDG GVGD G + D G GG
Sbjct: 10 DGDGGGDDGVDGGGVGDDGDGDDSDCGDDGGG 41
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 169 PWWRGRPTMDGKTARGASSPAKPALHMPEP 80
P W + G T R PAKP+L++P P
Sbjct: 530 PKWLQQVKDGGNTNRRTRIPAKPSLNLPSP 559
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 37 SRCATTMLLR-L*STMAPACARPVSPAT 117
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_41430| Best HMM Match : SSXT (HMM E-Value=7.6)
Length = 188
Score = 27.9 bits (59), Expect = 7.3
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Frame = -2
Query: 538 MGTVWETPSPESSTIPVVRPEAYSESTAWMATYMAGELK-VSNMIWVIFSLLALGLRGAS 362
M + + PSP P+A+ + A Y +G LK S V + L+ G G
Sbjct: 1 MAELADLPSPRMDWSSTDLPQAFKKFRATCELYFSGPLKEKSEPDKVSYLLIWTGDEGIE 60
Query: 361 VSSTGCSSGATRSSL*KVW 305
+SST S L W
Sbjct: 61 LSSTWALSADDSKKLDTYW 79
>SB_37603| Best HMM Match : Pox_A32 (HMM E-Value=0.0085)
Length = 1411
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 37 SRCATTMLLR-L*STMAPACARPVSPAT 117
S C T+L+R L +T APA P SPAT
Sbjct: 21 SSCLATLLVRPLETTPAPAPTTPTSPAT 48
>SB_12700| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 461
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 37 SRCATTMLLR-L*STMAPACARPVSPAT 117
S C T+L+R L +T APA P SPAT
Sbjct: 14 SSCLATLLVRPLETTPAPAPTTPTSPAT 41
>SB_31099| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = -2
Query: 463 STAWMATYMAGELKVSNMIWV---IFSLLALGL 374
S AW+ + + EL+ S +WV IFS+L +G+
Sbjct: 163 SVAWLCSLLYLELEASLYVWVPSLIFSILIIGV 195
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 39 KMCDDDVAALVVDNG-SGMCKAGFAGD 116
++CD D + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 163 WRGRPTMDGKTARGASSPAKPALHMPEP 80
W + G T R PAKPAL++P P
Sbjct: 72 WLQQVKDGGNTNRRTRIPAKPALNLPSP 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,794,057
Number of Sequences: 59808
Number of extensions: 421447
Number of successful extensions: 1475
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1471
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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