Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31277
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 30 0.35
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 29 0.80
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.80
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 27 3.2
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 3.2
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.6
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 26 5.6
SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|ch... 25 7.5
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 7.5
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 9.9
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 9.9
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo... 25 9.9
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 9.9
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 534 PTSPSQRRAKTSVLSNAQLERNKTKEQLEEEKKISLSIPIKPL 662
P S R T+ N QL R +TK+ L +ISL PIK L
Sbjct: 226 PASLHSRVESTNSFIN-QLNRRRTKDNLTNNPEISLDEPIKAL 267
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 28.7 bits (61), Expect = 0.80
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 449 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIPKKS 559
EEKR+++EE++K + +LQA + K N + KKS
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKS 172
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 28.7 bits (61), Expect = 0.80
Identities = 11/36 (30%), Positives = 24/36 (66%)
Frame = +3
Query: 537 TSPSQRRAKTSVLSNAQLERNKTKEQLEEEKKISLS 644
+S ++ + K++++ E N +EQ++E+KK+S S
Sbjct: 473 SSSNELKEKSALIDKKDQELNNLREQIKEQKKVSES 508
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 63 SLGTGSWTGSTATLECGAAAT 1
++GTG W GS TL G AA+
Sbjct: 96 AIGTGVWVGSKNTLREGGAAS 116
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 295 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 179
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 546 SQRRAKTSVLSNAQLERNKTKEQLEEEKKISL 641
SQ + +S A LE KTK+ +++KKISL
Sbjct: 20 SQVQIPSSCDRKASLETLKTKKNAQKKKKISL 51
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 63 SLGTGSWTGSTATLECGAAAT 1
++GTG W GS+ +L G AA+
Sbjct: 96 AIGTGVWVGSSKSLYRGGAAS 116
>SPCC1281.04 |||pyridoxal reductase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 333
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 528 PDPTSPSQRRAKTSVLSNAQLERNKTKEQLEEEKKI 635
P P S + +RA++++ + L+++ + EQLEE KK+
Sbjct: 280 PIPGSTTVQRAESNL---SALKKSLSSEQLEEAKKV 312
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 110 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNV 15
CW I G S L+ AL+L PA+ NV
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNV 323
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 212 EFIKRQDQKRSDLDEQLKEY 271
E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 525 RPDPTSPSQRRAKTSVLSNAQLERNKTKEQ 614
+P P PS+R+ K+++ S + + K+K +
Sbjct: 24 KPSPPLPSRRKGKSALRSALEKKNRKSKSK 53
>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
Length = 686
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 591 ERNKTKEQLEEEKKISLSIPIK 656
+RNK E + EEK++ +PI+
Sbjct: 422 KRNKDAEDIYEEKELESKVPIR 443
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Frame = -3
Query: 103 CLLSVARVEVGHSVTRHWFLDRQH 32
C L + + +++ R W L R+H
Sbjct: 80 CCLQILGIATSYTILRSWLLSRKH 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,781
Number of Sequences: 5004
Number of extensions: 28394
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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