Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31277
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.091
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           31   0.85 
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            30   1.5  
SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)                     30   1.5  
SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)                 29   3.4  
SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)                     29   4.5  
SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)           28   6.0  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   7.9  

>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 34.3 bits (75), Expect = 0.091
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = +2

Query: 446 IEEKRQRLEEAEKKRQAMLQAMKDA 520
           +EE+R+RLE  EK+RQA  QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = +2

Query: 449  EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIPKKSENFGFE 577
            EE+RQ+ EEA K+R+  L A K++SK+       ++S N  F+
Sbjct: 1344 EERRQKREEARKRREEKL-AKKESSKSSNKRKSKERSGNPSFK 1385


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 636  RFSSPLPAAPWSCCAPAGHCSKPKFSL 556
            +F + L + PW    P GH + P FSL
Sbjct: 1174 KFRAQLNSCPWQQATPRGHVTHPSFSL 1200


>SB_23388| Best HMM Match : ParBc (HMM E-Value=0.3)
          Length = 1168

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/34 (35%), Positives = 25/34 (73%)
 Frame = +2

Query: 443 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFT 544
           ++EEK++RL+  E+ + ++ +A K+ASK+  + T
Sbjct: 427 EVEEKKRRLQRYERLQSSLNEAYKEASKSSVDGT 460


>SB_41| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 642 TGRFSSPLPAAPWSCCAPAGHCSKPKFS 559
           TG++S      P +CCA A  C K  F+
Sbjct: 193 TGQYSQTCTQGPGACCATAESCCKASFT 220


>SB_15709| Best HMM Match : CAP_GLY (HMM E-Value=0)
          Length = 729

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 443 DIEEKRQRLEEAEKKRQAMLQAMKD 517
           D+EEK + LEEA+ + +A+   MKD
Sbjct: 522 DLEEKAKELEEAKSENEAISGKMKD 546


>SB_59534| Best HMM Match : AA_permease (HMM E-Value=3.1e-05)
          Length = 889

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 555 RAKTSVLSNAQLERNKTKEQLEEEKK 632
           R K + + N Q+E NK +  LEEEKK
Sbjct: 269 RLKGAAVLNIQIEDNKQQRLLEEEKK 294


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 179 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 298
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_22747| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 337

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 380 RGAFLLRHEKPCAWPASL*GV 318
           RGA L R+E PC W A L G+
Sbjct: 69  RGAALQRNEPPCMWIAILNGI 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,275
Number of Sequences: 59808
Number of extensions: 235270
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)