Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31277
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016674-4|AAB66130.1|  287|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 222 SVKTRSGRTWMNS*RNTSTNGANSGPRRRMSSNAL 326
           S+K  +G        N+STNG N+   RR+S N+L
Sbjct: 594 SMKLSNGSNSSAGSSNSSTNGVNNSSFRRLSFNSL 628


>U80441-1|AAB37651.1|  647|Caenorhabditis elegans Hypothetical
           protein F27C1.6 protein.
          Length = 647

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 443 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIPKKSENF 568
           D E+ ++ ++E EK +   L      S  GP  T  K+ +NF
Sbjct: 514 DFEDMKEGVKEKEKVKDVDLNLAGWGSWVGPGMTEKKRRQNF 555


>AF016674-4|AAB66130.1|  287|Caenorhabditis elegans Hypothetical
           protein C03H5.3 protein.
          Length = 287

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +3

Query: 513 KMPARPDPTSPSQRRAKTSVLSNAQLERN-KTKEQLEEEKKISLSI 647
           K  +RP P++P ++ A+TS       +R  K ++ +EE++K+ +S+
Sbjct: 8   KRVSRPSPSTPLEKPAETSTNPMETPKRAVKGQKTVEEKEKLPISL 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,914,764
Number of Sequences: 27780
Number of extensions: 168904
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)