Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31276
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 35 0.036
At3g28840.1 68416.m03598 expressed protein 34 0.063
At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3, ubiqu... 33 0.19
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 33 0.19
At1g12080.1 68414.m01396 expressed protein 33 0.19
At4g28180.1 68417.m04040 expressed protein 32 0.33
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 32 0.33
At4g21670.1 68417.m03139 double-stranded RNA-binding domain (DsR... 31 0.44
At1g12080.2 68414.m01397 expressed protein 31 0.44
At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /... 31 0.58
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 31 0.77
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 31 0.77
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 30 1.0
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 30 1.3
At3g48880.2 68416.m05340 F-box family protein N7 protein - Medic... 30 1.3
At3g48880.1 68416.m05339 F-box family protein N7 protein - Medic... 30 1.3
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 29 2.4
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 29 2.4
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 29 2.4
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family... 29 3.1
At3g24870.1 68416.m03119 expressed protein 29 3.1
At5g05010.1 68418.m00532 clathrin adaptor complexes medium subun... 28 4.1
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi... 28 4.1
At1g26150.1 68414.m03192 protein kinase family protein similar t... 28 4.1
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 28 4.1
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi... 28 4.1
At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein ... 28 5.4
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 28 5.4
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 27 7.2
At2g46310.1 68415.m05760 AP2 domain-containing transcription fac... 27 7.2
At2g11005.1 68415.m01177 glycine-rich protein 27 7.2
At5g11430.1 68418.m01335 transcription elongation factor-related... 27 9.5
At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At2g29870.1 68415.m03627 major intrinsic family protein / MIP fa... 27 9.5
At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putat... 27 9.5
At1g72090.1 68414.m08333 radical SAM domain-containing protein /... 27 9.5
At1g13740.1 68414.m01613 expressed protein 27 9.5
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 35.1 bits (77), Expect = 0.036
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Frame = +3
Query: 72 PLDVAESAPVALDEVAPEVPSEI-KAADVIETA---SIPASESSPIVASETVLGITSEAL 239
P+ V E PV+++ P V SE+ +++DV T+ + AS+ + S TV + SE
Sbjct: 293 PVTVLE--PVSVENGHPPVESELERSSDVPFTSVAEKVNASDGEVLPDSGTVDVVVSEVS 350
Query: 240 SDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEE 350
SDVP E A QP+ +VVE+ +E+
Sbjct: 351 SDVPAETQALNAISLDSQPSGKDSVVENGNSKSESED 387
>At3g28840.1 68416.m03598 expressed protein
Length = 391
Score = 34.3 bits (75), Expect = 0.063
Identities = 32/106 (30%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = -3
Query: 400 GTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVI 221
G G T G++A+ G++AG SD+ GT+ G T S + T G + A+
Sbjct: 257 GYGATAGGATASGA--GTAAGGTTASDA---GTAAGTTASGAGTAAGGTTAAGAGAAAGA 311
Query: 220 PNTVSL-ATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADS 86
A G + AG + S S+ + T+G TSS T A S
Sbjct: 312 GAAAGAGAAAGGTTAAGGVSGSYGSSGGSASNTNGGTSSCGTSACS 357
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -3
Query: 400 GTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGIS 254
G G G++A G+ GS + +T GTS C S+ + G G S
Sbjct: 316 GAGAAAGGTTAAGGVSGSYGSSGGSASNTNGGTS-SCGTSACSNGGGAS 363
>At5g05560.1 68418.m00604 E3 ubiquitin ligase, putative E3,
ubiquitin ligase; contains similarity to Apc1/Tsg24
protein, the largest subunit of human anaphase-promoting
complex (APC/C) GI:11967711 from [Homo sapiens]
Length = 1678
Score = 32.7 bits (71), Expect = 0.19
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +3
Query: 141 KAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEVPTVVE 320
+A +V + +P S SPI+ S +L E + P PVA + + ++P +
Sbjct: 143 QAGEVNPPSHVPFSPVSPILGSREMLRQRKEVGNSSPQNFHSPVAH-DLISKRDMPCMSS 201
Query: 321 SETLAKPAEEPSIPLVAEE 377
L P EEP P EE
Sbjct: 202 HLILRDPLEEPG-PTYVEE 219
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 32.7 bits (71), Expect = 0.19
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = -3
Query: 388 TEAGSSATRGILGSSAGFA---NVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVIP 218
T S+A+ +S GF+ + + STT T+ ++++ + S GTS + +
Sbjct: 318 TSNTSNASASPFSASTGFSFLKSTASSTTSSTTPSAPPQTASSSSSFSFGTSANSGFNLS 377
Query: 217 NTVSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSAT 80
S A S A SI + S T ATS+ A+ A ++T
Sbjct: 378 TGSSAAPASSTSGA---VFSIATTTTTSSSTPAATSAPASSAPAST 420
>At1g12080.1 68414.m01396 expressed protein
Length = 104
Score = 32.7 bits (71), Expect = 0.19
Identities = 27/105 (25%), Positives = 46/105 (43%)
Frame = +3
Query: 75 LDVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPL 254
++V + PVA++ V EVP++ V+ET + +E +++ P+
Sbjct: 4 VEVEQVTPVAVENV--EVPTKTVEETVVETEKKDEETEKKTEEKDE----KTEVITETPV 57
Query: 255 EIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEPASV 389
V E + + TE P VVE E + EE + A E +V
Sbjct: 58 ---VEEEEKKAEEVTETPAVVEEEKKTEVVEEKQTEVAAAEEVAV 99
>At4g28180.1 68417.m04040 expressed protein
Length = 256
Score = 31.9 bits (69), Expect = 0.33
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Frame = +3
Query: 144 AADVIETASIPASESSPIVASETVLGITSEALS---DVPLEIPVPVAELEQVQPTEVPTV 314
+A + + A++ P + E+V + +++S +P+ +PVPV +L PTV
Sbjct: 6 SAGKVTAPPVAAAQIPPPLEEESVKEVVVQSVSVSVPIPISVPVPVPDL----VPSAPTV 61
Query: 315 VESETLAKPAEEPSIPLVAEEPASVIPVPV 404
+SE P P ++ + + V V
Sbjct: 62 SDSEAQVPLPLSPPAPEISHSKSDICSVSV 91
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 31.9 bits (69), Expect = 0.33
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Frame = -3
Query: 382 AGSSATRGILGSSAGFANVSDSTTVGTS--VGCTCSSSATGTGISRGTSDKASLVIPNTV 209
+GSS T + GSS+ F + S G+S G SSS G+ +G + P+T+
Sbjct: 482 SGSSTTTSVFGSSSAFGTTTPSPLFGSSSTPGFGSSSSIFGSAPGQGATPAFGNSQPSTL 541
Query: 208 SLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSATSK 74
+T A T +A G G +S+ A G +S +K
Sbjct: 542 FNSTPSTGQTG--SAFGQTGSA---FGQFGQSSAPAFGQNSIFNK 581
>At4g21670.1 68417.m03139 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 981
Score = 31.5 bits (68), Expect = 0.44
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Frame = +3
Query: 96 PVALDEVAP-EVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPV 272
P++ D +A EV +K A +A +PA+ P +A+ + S + VP +PV V
Sbjct: 472 PLSFDGMADTEVERRLKEAISASSAVLPAANIDPRIAAPVQFPMASASSVSVP--VPVQV 529
Query: 273 AELEQVQPTEVPTVVESETLAKPAEEPSIP--LVAEEPA 383
+ + +QP+ + S +P + SI LV EP+
Sbjct: 530 VQ-QAIQPSAM--AFPSIPFQQPQQPTSIAKHLVPSEPS 565
>At1g12080.2 68414.m01397 expressed protein
Length = 138
Score = 31.5 bits (68), Expect = 0.44
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = +3
Query: 108 DEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITS-EALSDVPLEIPVPVAELE 284
+E P V + A ++ET E + ET + ++V E PV E +
Sbjct: 38 EESVPAVTEQKSEAPIVETNEEVVVEEAEKKDEETEKKTEEKDEKTEVITETPVVEEEEK 97
Query: 285 QVQP-TEVPTVVESETLAKPAEEPSIPLVAEEPASV 389
+ + TE P VVE E + EE + A E +V
Sbjct: 98 KAEEVTETPAVVEEEKKTEVVEEKQTEVAAAEEVAV 133
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 234 ALSDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEE 377
A +V PV V +E T TVVE+E +P E S+P V E+
Sbjct: 2 ATVEVEQVTPVAVENVEVPTKTVEETVVETEVTQQPEE--SVPAVTEQ 47
>At1g72150.1 68414.m08342 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein similar to
SEC14-like protein 2 (Alpha-tocopherol associated
protein) (TAP) (bTAP) (Fragment) (SP:P58875) {Bos
taurus}; similar to GI:807956 from [Saccharomyces
cerevisiae]; contains Pfam PF00650 : CRAL/TRIO domain;
contains Pfam PF03765 : CRAL/TRIO, N-terminus
Length = 573
Score = 31.1 bits (67), Expect = 0.58
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +3
Query: 54 DAGETVPLDVAE----SAPVALDEVAP--EVPSEIKAADVIETASIPASESSPIVASETV 215
D T+P VAE +APV+ ++ P EV E +A S+ E +V +E V
Sbjct: 25 DKEVTIPTPVAEKEEVAAPVSDEKAVPEKEVTPEKEAPAAEAEKSVSVKEEETVVVAEKV 84
Query: 216 LGITSEALSDVPLE 257
+ +T+E + LE
Sbjct: 85 VVLTAEEVQKKALE 98
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 30.7 bits (66), Expect = 0.77
Identities = 25/89 (28%), Positives = 38/89 (42%)
Frame = +3
Query: 84 AESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIP 263
AE PV V PE + + +A+V E+ +PA +S V S + E + E
Sbjct: 362 AEKPPVETP-VEPEAEASVTSAEVEESVCVPAEVTSEEVPSSETPKVVEEEVIATKAEDD 420
Query: 264 VPVAELEQVQPTEVPTVVESETLAKPAEE 350
P E EQ + + E+E + P E
Sbjct: 421 SPEKE-EQTE--TLAAAAEAEEVVPPIPE 446
Score = 29.1 bits (62), Expect = 2.4
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +3
Query: 159 ETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTEVPTVVESETLAK 338
E A P E+ V E +TS + + + +P V E+V +E P VVE E +A
Sbjct: 360 EEAEKPPVETP--VEPEAEASVTSAEVEE-SVCVPAEVTS-EEVPSSETPKVVEEEVIAT 415
Query: 339 PAEEPS 356
AE+ S
Sbjct: 416 KAEDDS 421
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 30.7 bits (66), Expect = 0.77
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Frame = +3
Query: 174 PASESSPIVASETVLGITSEALSDV-----PLEIPVPV-AELEQVQPTEVPTVVESETLA 335
P +P +SET T + SD P++ P PV + +PT+VPT SE+
Sbjct: 653 PTPTQAPTPSSETTQVPTPSSESDQSQILSPVQAPTPVQSSTPSSEPTQVPTPSSSESYQ 712
Query: 336 KPAEEP-SIPLVAEEPAS 386
P P P + P +
Sbjct: 713 APNLSPVQAPTPVQAPTT 730
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 30.3 bits (65), Expect = 1.0
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 6/108 (5%)
Frame = +3
Query: 63 ETVPLDVAES-APVAL---DEVAPEVPSEIKAADV--IETASIPASESSPIVASETVLGI 224
E++P V ES APV + D V E I+ + +ET + + ET + +
Sbjct: 35 ESLPAPVTESQAPVEVTTKDLVVEETEKPIEETEEAQVETPEVVEIKKDEEAPVETPVVV 94
Query: 225 TSEALSDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLV 368
E+ ++ +E E+E+ + E P VVE E KP E P V
Sbjct: 95 EDESKTEEVVEAKKE-EEVEEKKTEEAPVVVEEE--KKPEAEEEKPAV 139
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 29.9 bits (64), Expect = 1.3
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 8/108 (7%)
Frame = -3
Query: 394 GITEAGSSATRG--ILGSSAGFANVSD----STTVGTSVGCTCSSSATGTGISRGTSDKA 233
G T +G S RG I+ +++ +S+ S G +G CSS +G+G+ +
Sbjct: 382 GSTGSGGSLLRGLGIVSTTSSSMELSNHDALSLAPGLGLGLPCSSGGSGSGLKELMMGNS 441
Query: 232 SLVIPNTVSLATIGEDSLAGI--EAVSITSAALISLGTSGATSSKATG 95
S+ P +L +G G SA L S+G G +G
Sbjct: 442 SVFGPKQTTLDFLGLGRAVGNGGNTGGGLSALLTSIGGGGGIDLFGSG 489
>At3g48880.2 68416.m05340 F-box family protein N7 protein - Medicago
truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 309
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 560 FNCFDSTFGLRHLGSGWLGSCCN 492
F+ F+ T GL H+ GW +CC+
Sbjct: 28 FSVFELTSGLAHVCRGWRAACCD 50
>At3g48880.1 68416.m05339 F-box family protein N7 protein - Medicago
truncatula, EMBL:CAA76808 ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 309
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 560 FNCFDSTFGLRHLGSGWLGSCCN 492
F+ F+ T GL H+ GW +CC+
Sbjct: 28 FSVFELTSGLAHVCRGWRAACCD 50
>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
PF00400: WD domain, G-beta repeats;
Length = 1327
Score = 29.1 bits (62), Expect = 2.4
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
Frame = +3
Query: 84 AESAPVALDEVA-PEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEI 260
A P+ + A PEV + + + +I A SS A +T + A ++ P
Sbjct: 1139 APKKPLLTQKTAQPEVAKPLALEEPTKPLAIEAPPSSE--APQTESAPETAAAAESPAPE 1196
Query: 261 PVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEP 380
VAE V SET A P + P V+E P
Sbjct: 1197 TAAVAESPAPGTAAVAEAPASETAAAPVDGPVTETVSEPP 1236
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 29.1 bits (62), Expect = 2.4
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = -3
Query: 388 TEAGSSA-TRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVIPNT 212
T+ GS T G GSSAG + G++ G S +T G + G S ++
Sbjct: 158 TDGGSYGDTTGDSGSSAGSPSYPSDDGSGSTAG--GPSGSTTDGSAGGESSMGG----DS 211
Query: 211 VSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADS 86
S GE A A S +A S G +GA S A ADS
Sbjct: 212 SSAGAAGESGSAA-TADSGDAAGADSGGAAGADSGGAASADS 252
Score = 27.1 bits (57), Expect = 9.5
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Frame = -3
Query: 403 TGTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTC----SSSATGTGISRGTSDK 236
TG + AGS + GS + S STT G++ G + SSSA G S +
Sbjct: 167 TGDSGSSAGSPSYPSDDGSGSTAGGPSGSTTDGSAGGESSMGGDSSSAGAAGESGSAATA 226
Query: 235 ASLVIPNTVSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSAT 80
S S G DS G + AA + GA ++ +G + T
Sbjct: 227 DSGDAAGADSGGAAGADS-GGAASADSGGAAAGETASGGAAAADTSGGSAET 277
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 29.1 bits (62), Expect = 2.4
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Frame = +3
Query: 105 LDEVAPEVPSEIKAADVIETASI-PASESSPIVASETVLGITSEALSDVPLEIPVPVAEL 281
+ E A + EI ++D + + PAS+S+P+V E + T + E P V E+
Sbjct: 21 VSEEAKLMEKEIISSDSADVVNDKPASDSNPVVTKEEEIDQT--PAGEPEKESPAVVEEV 78
Query: 282 EQVQPTEVPT-VVESETLAKPAEEPSI--PLVAEEPASVIPV 398
V E T V+ E K AE+ + P++ +E + + V
Sbjct: 79 GAVVKAEESTETVKHENGEKGAEQVELKEPILVKETVAEVNV 120
>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
protein
Length = 466
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/97 (24%), Positives = 37/97 (38%)
Frame = +3
Query: 96 PVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVA 275
P + A P+ + A TA+ + P+ ETV T+ VP PVP
Sbjct: 356 PQSTSNKALPAPATVTAEAESATATTTTVDK-PVPEPETVAATTTTVDKPVPEPEPVP-- 412
Query: 276 ELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEPAS 386
E V + V ++ + +P E + P P S
Sbjct: 413 --EPVPVPAIEAAVAAQVITEPTETEAKPKPHSRPLS 447
>At3g24870.1 68416.m03119 expressed protein
Length = 1841
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +3
Query: 78 DVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVAS--ETVLGITSEALSDVP 251
+ ++A + + P+ +++K + + ++PA E VAS T + + + +D
Sbjct: 1707 NTTQTASMGTTKGMPQASNDLKNIKAVGSTAVPALEPPSCVASVQSTASKVVNNSNTDSA 1766
Query: 252 LEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPSIPLVAEEP 380
PV Q + V + + + P+EE P + E+P
Sbjct: 1767 GNDPVSTPNQGLAQKHGIKGVTQRQQQSLPSEEKR-PKLPEKP 1808
>At5g05010.1 68418.m00532 clathrin adaptor complexes medium
subunit-related contains pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 527
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -3
Query: 376 SSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSAT----GTGISRGTSDKASLVIPNTV 209
SS G GS +GF +SD + T SS T +G+ G S K L+
Sbjct: 200 SSGGGGGYGSGSGFGMISDVDPINTKPKDRSRSSVTAPPKSSGMKLGKSGKNQLM----E 255
Query: 208 SLATIGEDSLAGIEAVSITSAA 143
SL GED + ++ + AA
Sbjct: 256 SLKAEGEDVIEDVKPTGQSKAA 277
>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 274 ATGTGISRGTSDKASLVIPNTVSLATIGEDSLAG 173
A TG+S+G++ +++L N ++LA E+ LAG
Sbjct: 60 AHATGVSKGSATRSALQKSNHLALAKFLENDLAG 93
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Frame = +3
Query: 111 EVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQV 290
E +P P +A S P ESSP T T+ S P P P E
Sbjct: 97 EPSPPPPLPTEAPPPANPVSSPPPESSPPPPPPTEAPPTTPITSPSPPTNPPPPPESPPS 156
Query: 291 QPTEVP--TVVESETLAKPAEEPSIPLVAEEPASVIPVP 401
P P + L P+ P L PAS IP P
Sbjct: 157 LPAPDPPSNPLPPPKLVPPSHSPPRHL-PSPPASEIPPP 194
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +3
Query: 96 PVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPVPVA 275
PV + EVAPEV ++ A+ ++T A E SP+ + +V+ SE+ + E+
Sbjct: 30 PVEVKEVAPEVTTQ---AEEVKTEQ--AKEESPVEEAVSVVEEKSESAPE-STEVASEAP 83
Query: 276 ELEQVQPTEVPTVVESETLAKPAEE 350
+ E P E +EE
Sbjct: 84 AAAEDNAEETPAAAEENNDENASEE 108
>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 274 ATGTGISRGTSDKASLVIPNTVSLATIGEDSLAG 173
A TG+S+G++ +++L N ++LA E+ LAG
Sbjct: 59 AHATGVSKGSATRSALQKANHLALAMFLENELAG 92
>At2g28200.1 68415.m03424 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 284
Score = 27.9 bits (59), Expect = 5.4
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -3
Query: 394 GITEAGSSATRGILGSSAGFANVSDS--TTVGTSVGCTCSSSATGTGISRGTSDKASLVI 221
G E GS T+ I G S + T T+V T SSSA G+G R SD+ + +
Sbjct: 2 GQDEVGSDQTQIIKGKRTKRQRSSSTFVVTAATTVTST-SSSAGGSGGERAVSDEYNSAV 60
Query: 220 PNTVSL-ATIGEDSLA 176
+ V+ T E+ +A
Sbjct: 61 SSPVTTDCTQEEEDMA 76
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Frame = +3
Query: 63 ETVPLDVAESA-PVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEAL 239
ET+ + V E P + E A + ++ + ++ E V E L +
Sbjct: 20 ETIKVTVTEEGDPCVITETANDQETQDLTFSIPVGENVTTVEIPVEVPDERSLPVGENVT 79
Query: 240 SDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPS 356
+ ++IPV + QP E P V E +P E P+
Sbjct: 80 T---VKIPVDDRDESSPQPPETPVEVRDEPSPQPPETPA 115
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 27.5 bits (58), Expect = 7.2
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +3
Query: 63 ETVPLDVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVL-GITSEAL 239
E + LD S V ++ E P + + + + +S S + L GI + A
Sbjct: 242 EPILLDAESSNLVGVENTNSEDPESLLNTEPTNVSDLENHVNSQKEDSLSSLSGIDAYAA 301
Query: 240 SDVPLEIPVPVAELEQVQPTEVPTVVESETLAKPAEEPS 356
S E+P ++L+ ++ + ++ET AEE S
Sbjct: 302 SGTVTELPEVSSQLDSTSKPQIVPLNDTETAFATAEELS 340
>At2g46310.1 68415.m05760 AP2 domain-containing transcription
factor, putative
Length = 294
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Frame = +3
Query: 84 AESAPVALDEVAPEVPSEIKAADVIETASIPASE---SSPIVASETVLGITSEALSDVPL 254
AE A + D A + + + P +E +P++ ETV G S S + L
Sbjct: 131 AEEAAIGYDRAAIRIKGHNAQTNFLTPPPSPTTEVLPETPVIDLETVSGCDSARESQISL 190
Query: 255 EIPVPVAELEQVQPTEVPT 311
P V TE T
Sbjct: 191 CSPTSVLRFSHNDETEYRT 209
>At2g11005.1 68415.m01177 glycine-rich protein
Length = 170
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/90 (22%), Positives = 41/90 (45%)
Frame = -3
Query: 400 GTGITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVI 221
G+ ++ ++ G G S GF + SD+ +V + S G+G G +D + +
Sbjct: 41 GSRDSDGSGDSSGGGSGDSGGFGDNSDNNSVSSDSSGGGSRDGGGSG-DNGNTDDGVVAL 99
Query: 220 PNTVSLATIGEDSLAGIEAVSITSAALISL 131
+ L T G A + +++ AA++ +
Sbjct: 100 VMSFVLVT-GVAPTATVVLMTVAVAAVVGV 128
>At5g11430.1 68418.m01335 transcription elongation factor-related
contains weak similarity to transcription elongation
factors
Length = 871
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Frame = +3
Query: 87 ESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIPV 266
E+ P +DEV PE + +K D I A+ S GI ++S V V
Sbjct: 501 EAKPEKIDEVTPEFDANVKVDDDISRVE-KAAALSDDKGERAWDGILQLSMSSV-----V 554
Query: 267 PVAEL----EQVQPTEVPTVVE 320
PVA + E+ + +E P +VE
Sbjct: 555 PVAGIFKSGEKAETSEWPAMVE 576
>At5g07040.1 68418.m00797 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 159
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Frame = +3
Query: 231 EALSDVPLEIPVPVAE----LEQVQPTEVPTVV--ESETLAKPAEEP-SIPLV---AEEP 380
EA SDV L++P P AE L++ P +V +S L +P P SI L A EP
Sbjct: 47 EATSDVVLDLPSPAAEVKLGLDRPVIESYPRIVLGDSRRLPRPNNGPCSICLCDYEAREP 106
Query: 381 ASVIP 395
IP
Sbjct: 107 VRCIP 111
>At2g29870.1 68415.m03627 major intrinsic family protein / MIP
family protein contains Pfam profile: MIP PF00230
Length = 139
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 245 CASRNTCSSSGTRASATD 298
CA+RNT SSSG+ S +D
Sbjct: 3 CAARNTMSSSGSSPSGSD 20
>At2g13100.1 68415.m01436 glycerol-3-phosphate transporter, putative
/ glycerol 3-phosphate permease, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 493
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 311 CWYFSRLHLLEFRYWNRYFERH 246
C +FS+L F YW Y+ RH
Sbjct: 293 CLFFSKLVAYTFLYWLPYYLRH 314
>At1g72090.1 68414.m08333 radical SAM domain-containing protein /
TRAM domain-containing protein contains Pfam profiles
PF00919: UPF0004 family protein, PF04055: radical SAM
domain protein, PF01938: TRAM domain
Length = 601
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 325 SDSTTVGTSVGCTCSSSATGTGISRGTSDKASLVIPNTVSLATIGEDSLAGIEAVSI 155
+D + T + S SA T I+RG S K LVI V + L G+ V +
Sbjct: 101 ADLWLINTCTVKSPSQSAMSTLITRGRSGKKPLVIAGCVPQGSRDLKELEGVSVVGV 157
>At1g13740.1 68414.m01613 expressed protein
Length = 348
Score = 27.1 bits (57), Expect = 9.5
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Frame = -3
Query: 394 GITEAGSSATRGILGSSAGFANVSDSTTVGTSVGCT----------CSSSATGTGISRGT 245
G+ G AT G GSS+ + + + G+S C CSS++ G R +
Sbjct: 184 GVDSDGGGATGG--GSSSSLSELDNKNQQGSSNSCNDERSPKIVAGCSSNSGSQGTERPS 241
Query: 244 SDKASLVIPNTVSLATIGEDSLAGIEAVSITSAALISL 131
+A+ V N EDS+ TS L+ +
Sbjct: 242 VTRANKVNENENEKRVRSEDSVDRKGKGMATSTGLVDM 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,593,434
Number of Sequences: 28952
Number of extensions: 176062
Number of successful extensions: 810
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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