Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5WHD1 Cluster: DNA primase DnaG; n=1; Bacillus clausii...    33   1.3  
UniRef50_A3JCB1 Cluster: Periplasmic protease; n=3; Gammaproteob...    31   6.7  
UniRef50_A0INU6 Cluster: GCN5-related N-acetyltransferase; n=1; ...    31   6.7  
UniRef50_Q8SS33 Cluster: T COMPLEX PROTEIN 1 THETA SUBUNIT; n=1;...    31   6.7  

>UniRef50_Q5WHD1 Cluster: DNA primase DnaG; n=1; Bacillus clausii
           KSM-K16|Rep: DNA primase DnaG - Bacillus clausii (strain
           KSM-K16)
          Length = 603

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = +1

Query: 88  LEEH*TLSSKVLSFLTTPEVHSHSH*FRRFEASR*ISRAYYILFSKLLNSLNHENLLDYL 267
           LEEH  L + +LSF+T     S        E  R    A Y+L   L N  + E L DY+
Sbjct: 499 LEEHQALYAYLLSFVTREPDASMKRFVESLEDRRLAKLAAYLLMQPLKNECSDEELADYI 558


>UniRef50_A3JCB1 Cluster: Periplasmic protease; n=3;
           Gammaproteobacteria|Rep: Periplasmic protease -
           Marinobacter sp. ELB17
          Length = 726

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 22/66 (33%), Positives = 29/66 (43%)
 Frame = -3

Query: 271 KKGNQEGSHDLGN*VVWRIICSKHVISTLTPQIVGTNGYVSELQVLLRNSVPCWTKFSAP 92
           + G  +   D+ N V  RII   H    L  Q VGT  + S   +LL  S   W   SA 
Sbjct: 116 RTGKLQPGFDIYNLVQKRIIERLHFALNLLDQSVGTLDFGSNDSILLDRSDSDWVANSAR 175

Query: 91  RDDAFT 74
            D+ +T
Sbjct: 176 LDELWT 181


>UniRef50_A0INU6 Cluster: GCN5-related N-acetyltransferase; n=1;
           Serratia proteamaculans 568|Rep: GCN5-related
           N-acetyltransferase - Serratia proteamaculans 568
          Length = 180

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 111 GQSSVLLETTRSH*QRDDGKATLLSTFFESINTCHCF 1
           G +S LLET R   QR +    +L T   ++  CHC+
Sbjct: 104 GVASALLETARHWAQRHETAGLMLETQNTNLPACHCY 140


>UniRef50_Q8SS33 Cluster: T COMPLEX PROTEIN 1 THETA SUBUNIT; n=1;
           Encephalitozoon cuniculi|Rep: T COMPLEX PROTEIN 1 THETA
           SUBUNIT - Encephalitozoon cuniculi
          Length = 485

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 220 RIICSKHVISTLTPQIVGTNGYVSELQVLLRNSVPCWTKFSAPRDDAFTL 71
           R +   H++STL P   G+ G VSE+      S   +TKF +     +TL
Sbjct: 305 RELLGGHILSTLEPPAEGSMGVVSEVATFREGSTE-YTKFISGSKKVYTL 353


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 269,746,322
Number of Sequences: 1657284
Number of extensions: 4223397
Number of successful extensions: 9369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9369
length of database: 575,637,011
effective HSP length: 87
effective length of database: 431,453,303
effective search space used: 10354879272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)