Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    27   0.77 
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    25   2.3  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   3.1  
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb...    25   4.1  

>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 175 IVGTNGYVSELQVLLRNSV-PCWTKFSAPRDDA 80
           + GTN  + E  VL R  + PCW K   P  DA
Sbjct: 457 VFGTNTALFEQFVLSRRVMGPCWLKIQQPNFDA 489


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 267 FFLKN*WHYWTY 302
           FFL++ WHYW +
Sbjct: 143 FFLEDTWHYWAH 154


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 11  QVLIDSKNVDSKVAFPSSRCQCERVVS 91
           Q+++DS+   SK  F    CQ   VVS
Sbjct: 279 QLVVDSRVAGSKARFARKGCQSNSVVS 305


>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 317 QSLGTVGPVMPS 282
           Q+LGTVGP +PS
Sbjct: 232 QNLGTVGPTLPS 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,558
Number of Sequences: 5004
Number of extensions: 19654
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)