Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1274 - 32312342-32312512,32312534-32312629,32312743-323128...    27   5.0  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    26   6.6  

>04_04_1274 -
           32312342-32312512,32312534-32312629,32312743-32312893,
           32313120-32313357,32313467-32313677,32313827-32314020,
           32315224-32315227
          Length = 354

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 214 ICSKHVISTLTPQIVGTNGYVS 149
           I  +H +  LT +IVGT GY+S
Sbjct: 199 IFGEHQLQALTHRIVGTYGYIS 220


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 241 LGN*VVWRIICSKHVISTLTPQIV 170
           +G+ V  R++C  HV++ LTP+++
Sbjct: 73  VGHAVASRLLCPLHVLALLTPRVL 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,042,064
Number of Sequences: 37544
Number of extensions: 111445
Number of successful extensions: 264
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)