Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     27   5.0  
SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)                       26   6.6  
SB_55369| Best HMM Match : EMP70 (HMM E-Value=0.026)                   26   8.7  

>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 220  RIICSKHVISTLTPQIVGTNGYVSELQVLLRNSVPCWTKF 101
            R +CS + I+T T Q+V T G+ +     LRN      KF
Sbjct: 1566 RFVCSDYRITTSTSQLVKTLGWETLEDRRLRNQSTLLYKF 1605


>SB_38778| Best HMM Match : HRM (HMM E-Value=4.6)
          Length = 331

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   WQVLIDSKNVDSKVAFPSSRCQCERVVS 91
           + V+ D  + DSK A P  RC C R+VS
Sbjct: 188 YAVMFDGDSSDSKFASP--RCGCPRLVS 213


>SB_55369| Best HMM Match : EMP70 (HMM E-Value=0.026)
          Length = 370

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 116 LLDKVQCSSRRRVHIDNV-TMEKQLYYQHFLNQLILA 9
           L+  VQC +R R H D+  +  K++   HFL  + L+
Sbjct: 215 LIGLVQCHARYRYHFDSAGSFTKRIRETHFLIDMNLS 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,516,624
Number of Sequences: 59808
Number of extensions: 138516
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)