Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK222905-1|BAD96625.1|  398|Homo sapiens U5 snRNP-specific prote...    28   6.2  
BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processin...    28   8.2  
AK126169-1|BAC86468.1|  132|Homo sapiens protein ( Homo sapiens ...    28   8.2  
AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8 pr...    28   8.2  
AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.         28   8.2  

>AK222905-1|BAD96625.1|  398|Homo sapiens U5 snRNP-specific protein
           variant protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 137 HLKFTHIAISSDDLRRQGRYHVL 205
           HL+ +HI +SSDD++  G  ++L
Sbjct: 147 HLRTSHIYVSSDDIKETGYTYIL 169


>BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processing
            factor 8 homolog (S. cerevisiae) protein.
          Length = 2335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 137  HLKFTHIAISSDDLRRQGRYHVL 205
            HL+  HI +SSDD++  G  ++L
Sbjct: 2084 HLRTNHIYVSSDDIKETGYTYIL 2106


>AK126169-1|BAC86468.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44181 fis, clone THYMU2038301, highly  similar
           to Homo sapiens mRNA for PRP8 protein. ).
          Length = 132

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 137 HLKFTHIAISSDDLRRQGRYHVL 205
           HL+  HI +SSDD++  G  ++L
Sbjct: 71  HLRTNHIYVSSDDIKETGYTYIL 93


>AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8
            protein.
          Length = 2335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 137  HLKFTHIAISSDDLRRQGRYHVL 205
            HL+  HI +SSDD++  G  ++L
Sbjct: 2084 HLRTNHIYVSSDDIKETGYTYIL 2106


>AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.
          Length = 2335

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 137  HLKFTHIAISSDDLRRQGRYHVL 205
            HL+  HI +SSDD++  G  ++L
Sbjct: 2084 HLRTNHIYVSSDDIKETGYTYIL 2106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,829,746
Number of Sequences: 237096
Number of extensions: 664789
Number of successful extensions: 993
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)