Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        20   7.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    20   7.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    20   9.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   9.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   9.2  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 74  IDNVTMEKQLYYQHFLNQL 18
           + N+T   Q++  H +NQ+
Sbjct: 113 LGNLTKHLQVFRDHLINQI 131


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
          protein.
          Length = 232

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 11 QVLIDSKNVDSKVAFPS 61
          Q+L  SK +++ +AFPS
Sbjct: 36 QILGVSKQIETGLAFPS 52


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 59 MEKQLYYQHFLNQ 21
          +EK+ +Y H+L +
Sbjct: 23 LEKEFHYNHYLTR 35


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 175 IVGTNGYVSELQVLLRNSVPCWTKFS 98
           +VGT G + +   L  + VP   KF+
Sbjct: 531 LVGTAGIILQAPTLYDDRVPIDKKFN 556


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 175 IVGTNGYVSELQVLLRNSVPCWTKFS 98
           +VGT G + +   L  + VP   KF+
Sbjct: 531 LVGTAGIILQAPTLYDDRVPIDKKFN 556


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 TTYYSPNYLIP*IMRTFL 259
           T +Y+ N +IP +  TFL
Sbjct: 249 TLFYTVNLIIPCVGITFL 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,720
Number of Sequences: 438
Number of extensions: 1311
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)