Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31274
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23590.1 68416.m02967 expressed protein                             28   1.3  
At5g01050.1 68418.m00008 laccase family protein / diphenol oxida...    27   4.1  
At5g01040.1 68418.m00007 laccase family protein / diphenol oxida...    27   4.1  
At3g17030.1 68416.m02174 expressed protein                             26   7.2  
At1g76840.1 68414.m08942 hypothetical protein                          25   9.5  

>At3g23590.1 68416.m02967 expressed protein 
          Length = 1309

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 163 NGYVSELQVLLRNSVPCWTKF--SAPRDDAFTLT 68
           NG ++++   L N VPCW+ F   AP + A   T
Sbjct: 515 NGRINQIPQSLPNEVPCWSSFVKGAPLNAAMVNT 548


>At5g01050.1 68418.m00008 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], lac110 laccase, Populus
           trichocarpa, EMBL:PTY13773
          Length = 586

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 48  LLFHRHVVNVNASSRGAL 101
           LL+H HVVN+ A+  GAL
Sbjct: 125 LLWHAHVVNLRATIHGAL 142


>At5g01040.1 68418.m00007 laccase family protein / diphenol oxidase
           family protein similar to laccase [Pinus
           taeda][GI:13661201], lac110 laccase, Populus
           trichocarpa, EMBL:PTY13773
          Length = 584

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 48  LLFHRHVVNVNASSRGAL 101
           LL+H HVVN+ A+  GAL
Sbjct: 125 LLWHAHVVNLRATLHGAL 142


>At3g17030.1 68416.m02174 expressed protein
          Length = 648

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/48 (31%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
 Frame = -2

Query: 140 GVVKKLSTLLDKVQCSSRRRVHIDNVTMEKQLYYQHFL--NQLILAIV 3
           G+ KK   L+D+++   RRR   + VT++  +Y ++FL  N ++ A++
Sbjct: 99  GMSKKKPELIDQLKKGHRRRRLANTVTID-SIYEKNFLSMNSVLEAVI 145


>At1g76840.1 68414.m08942 hypothetical protein
          Length = 176

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 142 QVLLRNSVPCWTKFSAPRDD 83
           + +L NSV CW +  + +DD
Sbjct: 89  ETILENSVECWKEIHSNKDD 108


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,894,468
Number of Sequences: 28952
Number of extensions: 97317
Number of successful extensions: 217
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)