Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31273
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    29   0.27 
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    26   1.9  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   3.3  

>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 28.7 bits (61), Expect = 0.27
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 178 WVKCIWRRKLSFRMLSSWYWRNLRRC 255
           W++C  R+ +S ++   ++WR+  RC
Sbjct: 311 WIRCQGRKDVSVKIPEIFWWRHAHRC 336


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 181 VKCIWRRKLSFRMLSSWYWRNLRRCTSSIC 270
           VKCI    LS  +LS  + RNL R   S C
Sbjct: 362 VKCICLTDLSVILLSGSFSRNLERVHLSYC 391


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 86   QVIFNPVSINQFVLDNAVI 142
            + +  PV ++++VLDNA+I
Sbjct: 1028 ETVEGPVKLSEYVLDNAII 1046


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,391
Number of Sequences: 5004
Number of extensions: 24719
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)