Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31273
         (344 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.58 
SB_58558| Best HMM Match : EGF (HMM E-Value=0)                         27   5.4  
SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               26   9.4  
SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.4  

>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -1

Query: 338  VISLS*RRCRSGRAYSTLSVAHLHIELVHRLRLRQYQDDNIRKL 207
            VI  + RRC++ R+Y  L  A + ++  +R  L+Q Q D++R L
Sbjct: 2270 VIQRNVRRCQAQRSYRRLRCAVIFVQRTYR-ALQQLQKDHVRFL 2312


>SB_58558| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1101

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +3

Query: 174  NMGEVHLAEEVKLPNVVILVLA*SETMHKFDMQMSDGES*ISS 302
            ++ +V + E   + N+V+  +  +   H F +++SDG + +S+
Sbjct: 882  SINDVEVVESHLIANLVVTRMGDTSAAHNFSIEVSDGTAMVST 924


>SB_24189| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1220

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 304 VELIQLSPSLICISNLCIVS 245
           +ELI +S SL+ + N+CI S
Sbjct: 685 IELISVSRSLVFLKNICICS 704


>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 148 TYLNFNP*IIWVKCIWRRKLSFRMLSSW 231
           T+L+F+P +I   CI   ++   ++ SW
Sbjct: 210 TFLSFSPSLITSSCIAASRICLNLIPSW 237


>SB_57064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 186 LHPYYLWVEIKIRKVMTALSRTNWLIETGLKIT*MKCHKTN 64
           L+P  +W+E +I +V+    R    +    +IT +  HK N
Sbjct: 195 LNPEAVWIEHEITEVINIHKRNPEAVRIAQEITEVNIHKLN 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,048,772
Number of Sequences: 59808
Number of extensions: 175880
Number of successful extensions: 288
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)