Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31273
         (344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    22   2.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   3.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   7.2  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    20   9.5  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 254 AQVRYANERRRELNKLDRTGTSVTIKI 334
           A+ RY  ERRR+    D   T   IKI
Sbjct: 40  AENRYLTERRRQQLSRDLGLTEAQIKI 66


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 KCIWRRKLSFRMLSSWYWRN 243
           +CIW+ K+ F  ++   W N
Sbjct: 363 QCIWQEKIVFAAVTWLGWIN 382


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 31  TPASDLYVLTLVSF 72
           TPA+D+Y L +V++
Sbjct: 232 TPAADIYSLGIVAW 245


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 254 AQVRYANERRRELNKLDRTGTSVTIKI 334
           A+ RY  ERRR+    D       IKI
Sbjct: 40  AENRYLTERRRQQLSRDLGLNEAQIKI 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,838
Number of Sequences: 438
Number of extensions: 1781
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)