Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31273
         (344 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14290.1 68418.m01671 hypothetical protein                          26   5.9  
At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nea...    26   5.9  
At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nea...    26   5.9  
At2g14720.2 68415.m01657 vacuolar sorting receptor, putative ide...    26   5.9  
At2g14720.1 68415.m01656 vacuolar sorting receptor, putative ide...    26   5.9  

>At5g14290.1 68418.m01671 hypothetical protein
          Length = 115

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 195 PNALHPYYLWVEIKIRKVMTALSRTN 118
           PN+ HP YLW  +  R  ++ L R N
Sbjct: 59  PNSDHPDYLWHLLDKRPALSELRRKN 84


>At2g14740.2 68415.m01663 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           [Arabidopsis thaliana] GI:1737220; contains a
           calcium-binding EGF-like domain signature
          Length = 628

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 290 TLSVAHLHIELVHRLRLRQYQDDNIRKL 207
           +L +A     LV++ RLRQY D  IR +
Sbjct: 579 SLGLAAAGAYLVYKYRLRQYMDSEIRAI 606


>At2g14740.1 68415.m01662 vacuolar sorting receptor, putative nearly
           identical to vacuolar sorting receptor homolog
           [Arabidopsis thaliana] GI:1737220; contains a
           calcium-binding EGF-like domain signature
          Length = 628

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 290 TLSVAHLHIELVHRLRLRQYQDDNIRKL 207
           +L +A     LV++ RLRQY D  IR +
Sbjct: 579 SLGLAAAGAYLVYKYRLRQYMDSEIRAI 606


>At2g14720.2 68415.m01657 vacuolar sorting receptor, putative
           identical to GB:U79960 GI:1737220; contains a
           calcium-binding EGF-like domain signature
          Length = 628

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 290 TLSVAHLHIELVHRLRLRQYQDDNIRKL 207
           +L +A     LV++ RLRQY D  IR +
Sbjct: 579 SLGLAAAGAYLVYKYRLRQYMDSEIRAI 606


>At2g14720.1 68415.m01656 vacuolar sorting receptor, putative
           identical to GB:U79960 GI:1737220; contains a
           calcium-binding EGF-like domain signature
          Length = 628

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 290 TLSVAHLHIELVHRLRLRQYQDDNIRKL 207
           +L +A     LV++ RLRQY D  IR +
Sbjct: 579 SLGLAAAGAYLVYKYRLRQYMDSEIRAI 606


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,966,893
Number of Sequences: 28952
Number of extensions: 126162
Number of successful extensions: 261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 419412672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)