Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31269
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 172 1e-43
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 171 2e-43
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 169 8e-43
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 53 1e-07
11_03_0196 - 11490624-11490923,11493561-11493599,11494091-11494897 29 2.6
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 2.6
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 2.6
11_06_0093 + 19999503-20000231,20000308-20000742,20000829-200016... 27 6.0
11_03_0164 + 10972526-10972723,10972818-10973549,10974148-109742... 27 6.0
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 27 6.0
12_01_0857 - 8043765-8043839,8044215-8044497,8044578-8044748,804... 27 7.9
10_07_0113 - 12993300-12993413,12993493-12993775,12993856-129940... 27 7.9
02_01_0686 + 5112712-5112942 27 7.9
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 172 bits (419), Expect = 1e-43
Identities = 80/121 (66%), Positives = 99/121 (81%)
Frame = +2
Query: 68 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 247
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 248 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 427
TK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 428 D 430
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 171 bits (417), Expect = 2e-43
Identities = 84/126 (66%), Positives = 102/126 (80%), Gaps = 4/126 (3%)
Frame = +2
Query: 65 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 232
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 233 PVRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEV 412
PVR+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEV
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 413 EVTIAD 430
EVTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 169 bits (412), Expect = 8e-43
Identities = 81/121 (66%), Positives = 100/121 (82%)
Frame = +2
Query: 68 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 247
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 248 TKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIA 427
TK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
Query: 428 D 430
D
Sbjct: 127 D 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 52.8 bits (121), Expect = 1e-07
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Frame = +2
Query: 116 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEG 295
++P +IRI L S V +E C +I AK + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 296 SKTWDRFQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 424
+ F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>11_03_0196 - 11490624-11490923,11493561-11493599,11494091-11494897
Length = 381
Score = 28.7 bits (61), Expect = 2.6
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Frame = -1
Query: 435 YASAMVTSTSTPG-SMLIEVICFTISEGECRSITLL-W-----IRI*KRSQVFEPSPQGV 277
Y + + T P +++++ C+T+S E S+ L W ++I + + PS +
Sbjct: 251 YVAGDLFHTVPPAQAVMLKRFCYTLSSREMISLVLHHWSDDDCVKILTQCRKAIPSREEG 310
Query: 276 FRVVIRKILVGMRTGPFTRSFCFLAPLIRSAQTFSSERTLREVRVILMR 130
+V+I +ILVG GP + ++ T +R R+ R + ++
Sbjct: 311 GKVIIIEILVGPSLGPVMFEAQLMMDMLMLVNTRGRQRDERDWRDLFLK 359
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 67 GSRCSVRQRHRETPGRGLPYSP 132
G CS R+RHR G LP++P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 160 CTLTREGLC*PNQWSQETEAACKGPSP 240
C L EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>11_06_0093 +
19999503-20000231,20000308-20000742,20000829-20001670,
20001748-20001916
Length = 724
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 196 QWSQETEAACKGPSPHANQDLAYHHPENSLR*RFK--DLGSFSDANPQE 336
+W +E EAA + +P D+ N R R K G+ S NP++
Sbjct: 188 EWDKEDEAAAESNTPQVLADIPVQRARNWARTRVKKNSDGTLSFPNPED 236
>11_03_0164 +
10972526-10972723,10972818-10973549,10974148-10974285,
10974522-10974991,10975069-10975239,10975320-10975602,
10975682-10975795
Length = 701
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 196 QWSQETEAACKGPSPHANQDLAYHHPENSLR*RFK--DLGSFSDANPQE 336
+W +E EAA + +P D+ N R R K G+ S NP++
Sbjct: 255 EWDKEDEAAAESNTPQVLADILVQRARNWARARVKKNSDGTLSFPNPED 303
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 196 QWSQETEAACKGPSPHANQDLAYHHPENSLR*RFK--DLGSFSDANPQE 336
+W +E EAA K +P D+ N R R K G+ NP++
Sbjct: 213 EWDKEDEAAAKSNTPQVLADIPIQRARNCARARVKKNSDGTLLFPNPED 261
>12_01_0857 -
8043765-8043839,8044215-8044497,8044578-8044748,
8044826-8045670,8045828-8046262,8046339-8046563,
8046700-8046781,8046814-8047067
Length = 789
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 196 QWSQETEAACKGPSPHANQDLAYHHPENSLR*RFK--DLGSFSDANPQE 336
+W E EAA + +P D+ N R R K G+ S NP++
Sbjct: 132 EWDNEDEAAAESNTPQVLADIPVQRARNWARARVKKNSDGTLSFPNPED 180
>10_07_0113 -
12993300-12993413,12993493-12993775,12993856-12994026,
12994104-12994948,12995035-12995307,12995549-12995953
Length = 696
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 196 QWSQETEAACKGPSPHANQDLAYHHPENSLR*RFK--DLGSFSDANPQE 336
+W +E EAA + +P D+ N R R K G+ S NP++
Sbjct: 80 EWDKEDEAAVESNTPQVLADIPVQRARNWARARVKKNSDGTLSFPNPED 128
>02_01_0686 + 5112712-5112942
Length = 76
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +3
Query: 36 FISAGIQQA-TWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMYAHSRR 179
FI A + + W+ + K +RN R+R LF L LA A RR
Sbjct: 6 FIGAALIEVWRWEERMVEKKRTRNTRERGGLFPRKLQLRALAAIARFRR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,638
Number of Sequences: 37544
Number of extensions: 303809
Number of successful extensions: 872
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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