Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31269
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   176   6e-45
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.0  
U44902-1|AAA93318.1|  483|Caenorhabditis elegans serine/threonin...    27   5.3  
AC024770-7|AAP13756.1|  411|Caenorhabditis elegans Checkpoint ki...    27   5.3  
AC024770-6|AAF59485.2|  503|Caenorhabditis elegans Checkpoint ki...    27   5.3  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   7.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical pr...    27   9.3  
X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.    27   9.3  
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  176 bits (429), Expect = 6e-45
 Identities = 78/101 (77%), Positives = 95/101 (94%)
 Frame = +2

Query: 128 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGEGSKTW 307
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPCGEGSKTW
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPCGEGSKTW 76

Query: 308 DRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 430
           DRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 77  DRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 170 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPCGE 292
           +E V A  + G KK+  + K   + PTK    +T++ P  E
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPPTTE 399


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 101  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 211
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U44902-1|AAA93318.1|  483|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  SRCSVRQRHRETPGRGLPYSPHQDHSYFSQCTLTRE 177
           + CS ++RH ETP      +  Q+ S FSQ T T +
Sbjct: 317 AECSAKRRHLETPNEKSTLAERQNAS-FSQPTKTED 351


>AC024770-7|AAP13756.1|  411|Caenorhabditis elegans Checkpoint
           kinase protein 1, isoformb protein.
          Length = 411

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  SRCSVRQRHRETPGRGLPYSPHQDHSYFSQCTLTRE 177
           + CS ++RH ETP      +  Q+ S FSQ T T +
Sbjct: 225 AECSAKRRHLETPNEKSTLAERQNAS-FSQPTKTED 259


>AC024770-6|AAF59485.2|  503|Caenorhabditis elegans Checkpoint
           kinase protein 1, isoforma protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 70  SRCSVRQRHRETPGRGLPYSPHQDHSYFSQCTLTRE 177
           + CS ++RH ETP      +  Q+ S FSQ T T +
Sbjct: 317 AECSAKRRHLETPNEKSTLAERQNAS-FSQPTKTED 351


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 168 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 73
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 65  MAAAVVSGKDIEKPQAEVSPIH 130
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 65  MAAAVVSGKDIEKPQAEVSPIH 130
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 456  YFIGGSAYASAMVTSTSTPGSMLIEVICFT 367
            YF+    Y +A + +T T GS+L+ V C T
Sbjct: 961  YFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical
           protein T02C12.1 protein.
          Length = 1017

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 312 RSQVFEPSPQGVFRVVIRKILVGMRTGPFTRSFCFLAPLIRSAQTFSSERTLREVRVIL 136
           R+++F  SPQ VFR      L  +RT        FL  ++R  Q     R +  VR I+
Sbjct: 681 RTKIFIRSPQTVFR------LEELRTEQLPNVITFLQKMVRGVQQRERYRRMLAVRKII 733


>X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.
          Length = 1017

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -1

Query: 312 RSQVFEPSPQGVFRVVIRKILVGMRTGPFTRSFCFLAPLIRSAQTFSSERTLREVRVIL 136
           R+++F  SPQ VFR      L  +RT        FL  ++R  Q     R +  VR I+
Sbjct: 681 RTKIFIRSPQTVFR------LEELRTEQLPNVITFLQKMVRGVQQRERYRRMLAVRKII 733


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
           protein K08B12.2b protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 365 FQRESVGRSLSCGFASENDPRSLNLHRKEFSG 270
           FQRE +   L+CG AS +  R+L   + E  G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 365 FQRESVGRSLSCGFASENDPRSLNLHRKEFSG 270
           FQRE +   L+CG AS +  R+L   + E  G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>AC006656-1|AAF39881.1|  592|Caenorhabditis elegans Hypothetical
           protein H12I13.1 protein.
          Length = 592

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 155 RNVRSLEKVC-ADLINGAKKQKLRVKGPVRMPTKILRITTRKT 280
           R+ +S  KVC   L  GAKK++        +  KIL IT  KT
Sbjct: 364 RDNKSSNKVCRTSLSGGAKKKRKERNARSEVGDKILGITETKT 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,302,418
Number of Sequences: 27780
Number of extensions: 244943
Number of successful extensions: 560
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)