Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31267
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz...    28   1.9  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    27   3.2  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    26   7.5  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   7.5  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.9  

>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 322

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 601 VLSCFFFLKLSVLGIPRMPLYLIDKK*NFHVPSNKPVSYNIIMTK 735
           V SC + + + V G+  +P + I +     +PS K V YN+I  K
Sbjct: 233 VSSCAYSMTIHVPGLCSLPAFKIQED----IPSEKIVCYNVIKEK 273


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 176 ELSSVLNKYTKFRVNPSKPCSKIPLLTK 259
           E +SV NKY  F   PS+ C   PL ++
Sbjct: 363 EFNSVYNKYFDFTNPPSRSCVAAPLASE 390


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -1

Query: 431 ILNRKSNFNSSCILQ 387
           +LN+KS F+++CILQ
Sbjct: 24  LLNKKSQFHTTCILQ 38


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 688 HVPSNKPVSYNIIMTKGAWEYIKSLQFGRLQIV*EN 795
           +VP ++ ++   I++K A EYIKSLQ    +++ EN
Sbjct: 472 YVPLSRKLNKATILSK-ATEYIKSLQSKNKKLIEEN 506


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 225 QNHVQRFHYLLSYIRLK 275
           QNH+  F+ LL ++R+K
Sbjct: 430 QNHIDEFYSLLKFLRIK 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,434
Number of Sequences: 5004
Number of extensions: 58394
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)