Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31267
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37744| Best HMM Match : BON (HMM E-Value=9.7)                       29   3.5  
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)                 29   3.5  
SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)                 29   3.5  
SB_12453| Best HMM Match : DUF765 (HMM E-Value=5)                      29   3.5  
SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_8996| Best HMM Match : DUF765 (HMM E-Value=7.2)                     28   8.0  
SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_52596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  
SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.0  

>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 694 PSNKPVSYNIIMTKGAWEYIKSLQFGRLQIV 786
           PSNK VSY + M  G   +I+  + G+ QIV
Sbjct: 846 PSNKQVSYTMTMNGGLLWFIEKPKVGKWQIV 876


>SB_37744| Best HMM Match : BON (HMM E-Value=9.7)
          Length = 116

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 694 PSNKPVSYNIIMTKGAWEYIKSLQFGRLQIV 786
           PSNK VSY + M  G   +I+  + G+ QIV
Sbjct: 75  PSNKQVSYTMTMNGGLLWFIEKPKVGKWQIV 105


>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
          Length = 612

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 694 PSNKPVSYNIIMTKGAWEYIKSLQFGRLQIV 786
           PSNK VSY + M  G   +I+  + G+ QIV
Sbjct: 537 PSNKQVSYTMTMNGGLLWFIEKPKVGKWQIV 567


>SB_37880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 85  SSLVPNXLQPGGATSIERPPPR 20
           S L P  L+PG    +ERPPPR
Sbjct: 187 SYLAPEVLRPGDPLVLERPPPR 208


>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
          Length = 666

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 694 PSNKPVSYNIIMTKGAWEYIKSLQFGRLQIV 786
           PSNK VSY + M  G   +I+  + G+ QIV
Sbjct: 493 PSNKQVSYTMTMNGGLLWFIEKPKVGKWQIV 523


>SB_12453| Best HMM Match : DUF765 (HMM E-Value=5)
          Length = 140

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 103 LKKLETSSLVPNXLQPGGATSIERPPPR 20
           +K ++  SL  N   PG    +ERPPPR
Sbjct: 7   VKWIDLKSLTSNSCSPGDPLVLERPPPR 34


>SB_21994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 103 LKKLETSSLVPNXLQPGGATSIERPPPR 20
           L+   + SL+ N   PG    +ERPPPR
Sbjct: 26  LRSTVSISLISNSCSPGDPLVLERPPPR 53


>SB_56430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_8996| Best HMM Match : DUF765 (HMM E-Value=7.2)
          Length = 190

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 100 KKLETSSLVPNXLQPGGATSIERPPPR 20
           +K   SS   N   PG    +ERPPPR
Sbjct: 58  RKRRKSSTTSNSCSPGDPLVLERPPPR 84


>SB_54757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_52596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 100 KKLETSSLVPNXLQPGGATSIERPPPR 20
           K +++SS   N   PG    +ERPPPR
Sbjct: 44  KIVKSSSRASNSCSPGDPLVLERPPPR 70


>SB_50032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_43613| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_43412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_31108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_8174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 32 SLISNSCSPGDPLVLERPPPR 52


>SB_4560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 82 SLVPNXLQPGGATSIERPPPR 20
          SL+ N   PG    +ERPPPR
Sbjct: 30 SLISNSCSPGDPLVLERPPPR 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,552
Number of Sequences: 59808
Number of extensions: 393777
Number of successful extensions: 3124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2329
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)