Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31267
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.37 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.37 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -2

Query: 367  QLSRHATSHKLIG 329
            QLSRHATSH+L G
Sbjct: 1452 QLSRHATSHELKG 1464


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = -2

Query: 367  QLSRHATSHKLIG 329
            QLSRHATSH+L G
Sbjct: 1448 QLSRHATSHELKG 1460


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 568 NKYKRSPSQ*RLSGRFIYKTTV 503
           ++YKRS S+   S +FI  TTV
Sbjct: 451 HEYKRSVSRESNSNQFILMTTV 472


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 488 TFPCLLPFPK 459
           T PCLLP PK
Sbjct: 625 TLPCLLPRPK 634


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 488 TFPCLLPFPK 459
           T PCLLP PK
Sbjct: 593 TLPCLLPRPK 602


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,255
Number of Sequences: 438
Number of extensions: 4695
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)