Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31267
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26100.2 68416.m03250 regulator of chromosome condensation (R...    32   0.53 
At3g26100.1 68416.m03251 regulator of chromosome condensation (R...    32   0.53 
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea...    29   2.8  

>At3g26100.2 68416.m03250 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 532

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 448 HHITFGN-GNKHGNVYSLTRLSSCK*IAHLIVIVTENVYIYYIPSWNVHT 594
           HH +F   GN+H NV S T ++S K +   +V ++    IY    WN HT
Sbjct: 445 HHPSFDEQGNRHANVLSPTVVTSLKQVNERMVQISLTNSIY----WNAHT 490


>At3g26100.1 68416.m03251 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 432

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 448 HHITFGN-GNKHGNVYSLTRLSSCK*IAHLIVIVTENVYIYYIPSWNVHT 594
           HH +F   GN+H NV S T ++S K +   +V ++    IY    WN HT
Sbjct: 345 HHPSFDEQGNRHANVLSPTVVTSLKQVNERMVQISLTNSIY----WNAHT 390


>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
           family protein similar to Pop3 (GI:3434986)
           [Schizosaccharomyces pombe]; contains Pfam PF00400: WD
           domain, G-beta repeat (6 copies, 2 weak);
          Length = 312

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/20 (55%), Positives = 18/20 (90%)
 Frame = +2

Query: 749 TLKVYSLEGFKLFKKITGNE 808
           T+K+++L+GFKL K +TG+E
Sbjct: 240 TVKIWNLDGFKLEKVLTGHE 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,448,334
Number of Sequences: 28952
Number of extensions: 285105
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)