Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31266
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 204 8e-54
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 122 4e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 120 2e-28
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 111 1e-25
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 77 3e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 73 4e-14
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 63 4e-11
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 46 4e-06
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.100
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.40
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.53
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.93
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.8
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 3.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 5.0
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 5.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.0
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 6.6
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.7
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 204 bits (499), Expect = 8e-54
Identities = 92/98 (93%), Positives = 95/98 (96%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 515
NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQ
Sbjct: 78 NWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQ 137
Query: 516 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 629
AVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI 175
Score = 151 bits (365), Expect = 1e-37
Identities = 68/76 (89%), Positives = 73/76 (96%)
Frame = +2
Query: 107 DEEVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSX 286
+EE+AALV+DNGSGMCKAGFAGDDA RAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 287 RGILTLKYPIEHGIVH 334
RGILTLKYPIEHGIV+
Sbjct: 62 RGILTLKYPIEHGIVN 77
Score = 54.0 bits (124), Expect = 2e-08
Identities = 24/27 (88%), Positives = 26/27 (96%)
Frame = +1
Query: 652 GRDLTDYLMKILTERGYSFTTTAEREI 732
GRDLTDYLMKIL ERGY+F+TTAEREI
Sbjct: 182 GRDLTDYLMKILMERGYTFSTTAEREI 208
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 122 bits (295), Expect = 4e-29
Identities = 53/99 (53%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 512
NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++
Sbjct: 82 NWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSL 141
Query: 513 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 629
Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 142 QPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 84.6 bits (200), Expect = 1e-17
Identities = 37/69 (53%), Positives = 50/69 (72%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSXRGILTL 304
+ +DNGSG KAGFAGDD + +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 305 KYPIEHGIV 331
+ PIE GI+
Sbjct: 72 QRPIERGII 80
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 652 GRDLTDYLMKILTERGYSFTTTAEREI 732
GRD+TDYL L + G+ ++AE+EI
Sbjct: 187 GRDVTDYLQLQLRKSGHELVSSAEKEI 213
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 120 bits (289), Expect = 2e-28
Identities = 50/98 (51%), Positives = 73/98 (74%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 515
++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQ
Sbjct: 78 DFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQ 137
Query: 516 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 629
AVLSLYA G ++G+V+DSGDGV+H VP+YE L H +
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLV 175
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSX 286
E A +V+DNG+G K G+A D+ R FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 287 RGILTLKYPIEHGIV 331
R +L +KYP+E+GI+
Sbjct: 62 RSLLQVKYPMENGII 76
Score = 32.3 bits (70), Expect = 0.076
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 652 GRDLTDYLMKILTERGYSFTTTAERE 729
GRD T YL+ +L +GY+F TA+ E
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFE 207
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 111 bits (267), Expect = 1e-25
Identities = 52/106 (49%), Positives = 69/106 (65%), Gaps = 8/106 (7%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 515
NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+Q
Sbjct: 101 NWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQ 160
Query: 516 AVLSLYASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAI 629
AVL+L AS + TG V+DSGDGV+H +P+ EGY + +I
Sbjct: 161 AVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI 206
Score = 39.5 bits (88), Expect = 5e-04
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 274
+++DNG+G K G+AG+DA VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 77.0 bits (181), Expect = 3e-15
Identities = 36/94 (38%), Positives = 52/94 (55%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 515
NWD +W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q
Sbjct: 76 NWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQ 135
Query: 516 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 617
+ +ASG+ T ++D G S IY+G+ L
Sbjct: 136 ETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDASRAVFPSIVG 211
+EV+A+V+D GS + GF+G+D + V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 72.9 bits (171), Expect = 4e-14
Identities = 34/94 (36%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Frame = +3
Query: 333 TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 512
+NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N P++ I
Sbjct: 93 SNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Query: 513 QAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 608
+ S Y + + ++GIVL+ G+ SH +P+ G
Sbjct: 152 DGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185
Score = 32.7 bits (71), Expect = 0.057
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDASRAVFPSIVGRPR 220
LV+DNGS +AG+ G+ + VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 63.3 bits (147), Expect = 4e-11
Identities = 26/98 (26%), Positives = 53/98 (54%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQ 515
+W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ Q
Sbjct: 79 DWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQ 138
Query: 516 AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 629
AV +A+ ++T +++D G + P+ +G + I
Sbjct: 139 AVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDASRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 280
EE+ +LV+D GS + G+AG+++ + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = +3
Query: 336 NWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNTPAMY 503
+W+ ++ W H Y+ L P + +PV L +RE TQ FE P
Sbjct: 121 DWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFT 179
Query: 504 VAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 608
+A + ++ LYA G G+V+D G + PI +G
Sbjct: 180 IAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.100
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 372 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 515
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 496 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 627
P T+P P T PV P S P+ P P PS++ P P
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAP 1079
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Frame = +1
Query: 493 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTP 627
PP +P P P VPP S P A + P P P+ K P P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 493 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTP 627
PP T+P P P VP + P P P PS++ TP
Sbjct: 1212 PPSTAPPVPTPSAGLPPVPVPTAKAP----PVPAPSSEAPSVSTP 1252
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 267 PT*ESFCPI-PTITP*WRGLPTIEGNTAREASSPAKPALHIPEPLSTTNAATSSS 106
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 29.5 bits (63), Expect = 0.53
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 472 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTP 627
C+ ++ PP T S S P VPP S T + PT ST SP P
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 223
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 472 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTP 627
C+ ++ PP T S S P VPP S T + PT ST +P P
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLP 166
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 484 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTP 627
ST P T S S P VPP S T + PT ST SP P
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLP 279
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 517 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 621
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 0.93
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 290 LXCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 189
L + L+ K+PS PY SRP A S TR
Sbjct: 302 LNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 517 PCSRCTRPVVPPVSCWTPATVSPTPCPST 603
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 499 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPLLASGT 645
C +PS+ C + PV + T S TP P+T + +PTP S T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTSTT 870
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 499 CTSPSK-PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPLLASGT 645
C +PS+ CS + + P T AT + TP P+T T +PT A+ T
Sbjct: 914 CYNPSQYVCSDGS--LSPNTVTTTKATTTFTPTPTTTTTPTPTTTSATST 961
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 493 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 600
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 307 FEGQDTSXALCLISYIRVLLSHTDHHA 227
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 493 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPLLAS 639
PP S + + P PP P S P P+ + P PL AS
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPAS 1738
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 372 RYDAKSSPCHPS*CTIPCSMGYL 304
RY A++ PC+ C PC +GY+
Sbjct: 300 RYGAQAQPCY---CGEPCCVGYI 319
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 414 LLTEAPLNPKANREKMTQIMFETFN 488
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 270 SPT*ESFC--PIPTITP*WRGLPTIEGNTAREASSPAKPAL 154
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 152 TYRSHCLLPTRQLLRRTS*ISEI 84
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Frame = +3
Query: 345 DMEKIWHHTFYNELRVAPEEHPVLLT-EAPLNPKANREKMT-----QIMFETFNTPAMYV 506
D +++W+H + L V ++ +++ E L +++ K+ +++T Y
Sbjct: 1257 DFQRLWYHWPF--LSVENDDKSIIINVELYLRSVSSKVKVVFGLPIDTIYQTTEVGKFYA 1314
Query: 507 AIQ-AVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAITGVWD 644
+ AV +YA V + + +S V YAL A VW+
Sbjct: 1315 STSVAVKQMYAESEGDSYVSEVLNTLSEVVHCTSTYALSSACLTVWN 1361
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 428 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 577
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.7
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 511 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPLLASGT 645
S+ S T P PP + T PA SP P P +T+ P ASGT
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPP-PKVGETYHPP--TASGT 943
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,290,713
Number of Sequences: 5004
Number of extensions: 74735
Number of successful extensions: 294
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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